PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07950A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 558aa    MW: 60552.2 Da    PI: 5.7887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07950AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.59.6e-791885573374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                + Ll+c +  +  d  la   L +++  as dgdp qR+a+yf+ ALa+rla   ++ ++ +++ + +   s+e +  +k++++
  Oropetium_20150105_07950A 188 QSLLACSRTAA-ADPGLAAVELVKVRAAASDDGDPAQRVAFYFADALARRLAC--NGAVRPVTAVDGR-FASDELTLCYKTLND 267
                                77999998655.588899999999****************************8..5555555555444.45999999******* PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLak 167
                                ++P+ kf+hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp  g   + +l +t +rL++
  Oropetium_20150105_07950A 268 ACPYSKFAHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRVRISGVPSPFLGpkPAASLAATSSRLSD 351
                                **************************************************887769********988888999*********** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                fA+ lg                        p+Ea+aVn++lql++ll   ++++++ ++vL+l ksl                 
  Oropetium_20150105_07950A 352 FAKLLGXXXXXXX-XXXXXXXXXXXXXXXXPDEAVAVNFMLQLYHLL---GDSDEPVRRVLHLAKSLXXXXXXXXXXXXXXXXX 431
                                **********999.788888888999999******************...66666777***********************99* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                                 +sl++ + r+s +r+ vEr ++g++i+ ++   egaer+ r+   ++W+  +e +GF+pv+ls++a+
  Oropetium_20150105_07950A 432 XXXXXXXXXXXXXXXXXESLDVAMTRDSPQRVRVERCMFGERIRRAIGpEEGAERTDRMAGSKEWQTLMEWCGFEPVKLSNYAM 515
                                ***********************************************8356899****************************** PP

                       GRAS 335 kqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                +qa+lll +++ +  y++ e++ +++ l W++rpL++vSaWr
  Oropetium_20150105_07950A 516 SQADLLLWNYDsKYKYSLIEQQPAFLsLAWEKRPLLTVSAWR 557
                                ***********7777999999999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.423160535IPR005202Transcription factor GRAS
PfamPF035143.3E-76188557IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQRHHXX XXXXXXXXXX XXPMPPRQAP VPSLPHGQIP  60
AASFGGGAWP HSEHFFVDAF VGGPQPSDAV FSDLPGAADF DSDGWMESLI ADAPVFADSD  120
LDRFIFTTPP PPIPVPAPAP AAEPVEPAAA HQPKAAAPAS LPHAATATPA ACSSPSSLDA  180
SCSAPILQSL LACSRTAAAD PGLAAVELVK VRAAASDDGD PAQRVAFYFA DALARRLACN  240
GAVRPVTAVD GRFASDELTL CYKTLNDACP YSKFAHLTAN QAILEATGAA TKIHIVDFGI  300
VQGIQWAALL QALATRPEGK PSRVRISGVP SPFLGPKPAA SLAATSSRLS DFAKLLGXXX  360
XXXXXXXXXX XXXXXXXXXX PDEAVAVNFM LQLYHLLGDS DEPVRRVLHL AKSLXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXES LDVAMTRDSP QRVRVERCMF GERIRRAIGP  480
EEGAERTDRM AGSKEWQTLM EWCGFEPVKL SNYAMSQADL LLWNYDSKYK YSLIEQQPAF  540
LSLAWEKRPL LTVSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01835571375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07950A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665334.10.0scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A060D4M40.0A0A060D4M4_MAIZE; GRAS transcription factor (Fragment)
STRINGSb01g009740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-104GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]