PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_07750A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 160aa MW: 17827.5 Da PI: 10.1213 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.5 | 8.9e-39 | 16 | 127 | 21 | 128 |
NAM 21 kkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgel 99 kv++k+l++ e+ike+diyk++PwdLpk +v ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ +g Oropetium_20150105_07750A 16 DKVARKPLSI-EIIKEMDIYKHDPWDLPKasTVGGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAtnnSGDS 98 5888999999.89***************5347777999**************************************97666677 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+ktdW+mhe+rl Oropetium_20150105_07750A 99 IGLKKSLVYYRGSAGKGTKTDWMMHEFRL 127 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.051 | 1 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.54E-40 | 16 | 132 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-14 | 38 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MVFKEFAREE GVISLDKVAR KPLSIEIIKE MDIYKHDPWD LPKASTVGGG EKEWYFFCLR 60 GRKYRNSIRP NRVTGSGFWK ATGIDRPIYS ATNNSGDSIG LKKSLVYYRG SAGKGTKTDW 120 MMHEFRLPPA AAAAITYASP SMQEAVSSNK LVFVTVHSI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-35 | 17 | 127 | 38 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-35 | 17 | 127 | 38 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-35 | 17 | 127 | 38 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-35 | 17 | 127 | 38 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
3swm_B | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
3swm_C | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
3swm_D | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
3swp_A | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
3swp_B | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
3swp_C | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
3swp_D | 1e-35 | 17 | 127 | 41 | 145 | NAC domain-containing protein 19 |
4dul_A | 1e-35 | 17 | 127 | 38 | 142 | NAC domain-containing protein 19 |
4dul_B | 1e-35 | 17 | 127 | 38 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_07750A |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981565.1 | 4e-78 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 7e-58 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3L6TSA4 | 3e-80 | A0A3L6TSA4_PANMI; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | Pavir.J03639.1.p | 2e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-58 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_07750A |