PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07708A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 331aa    MW: 36748.7 Da    PI: 7.2049
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07708AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-09227282355
                                --SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                kR ++ ke  + L    e   k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Oropetium_20150105_07708A 227 KRGKLPKEARQKLLHWWElhhKWPYPSETEKIALAEATGLDQKQINNWFINQRKRH 282
                                555555555555554444332789*****************************885 PP
2ELK42.91e-14202223122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELKhqLlrKY+g+Lg+L+qEFs
  Oropetium_20150105_07708A 202 ELKHQLLRKYGGCLGGLRQEFS 223
                                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.3E-2075119IPR005540KNOX1
PfamPF037903.2E-2177116IPR005540KNOX1
SMARTSM012563.4E-27121172IPR005541KNOX2
PfamPF037913.2E-23125170IPR005541KNOX2
SMARTSM011884.9E-8202223IPR005539ELK domain
PROSITE profilePS5121311.034202222IPR005539ELK domain
PfamPF037893.6E-11202223IPR005539ELK domain
PROSITE profilePS5007113.394222285IPR001356Homeobox domain
SuperFamilySSF466893.21E-20223295IPR009057Homeodomain-like
SMARTSM003893.2E-14224289IPR001356Homeobox domain
CDDcd000868.36E-15225285No hitNo description
Gene3DG3DSA:1.10.10.604.9E-28227288IPR009057Homeodomain-like
PfamPF059203.6E-16242281IPR008422Homeobox KN domain
PROSITE patternPS000270260283IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKRFAYLGEG GSSSTSNASF LQLPLPTAAS ASASAQVIPP EAHRSRLPLQ QLLADPSSSV  60
QTVRQSHQKG EISPPDIKAK IMSHPQYSAL VTAYLDCQKV GAPPDVSDRL SAVAVKLDQA  120
QRWPPRADPE LDQFMEAYCN MLVKYKEEMA RPIQEAAEFF KSVERQLDSI ADSSACDGAG  180
SSEDDQDTSC PEEVDPCAEV KELKHQLLRK YGGCLGGLRQ EFSKRKKRGK LPKEARQKLL  240
HWWELHHKWP YPSETEKIAL AEATGLDQKQ INNWFINQRK RHWKPTSEDM PFAMTTTMEG  300
GFILAPPPGA AAALYMDRPF MGDGMYRLGS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07708A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795146.11e-160homeobox protein knotted-1-like 12 isoform X3
SwissprotO650341e-110KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-110KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0A9GAR11e-173A0A0A9GAR1_ARUDO; Uncharacterized protein
STRINGSb01g006790.11e-151(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-88KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]