PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07662A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 278aa    MW: 28908.5 Da    PI: 8.1682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07662AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-0588110123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC+ CgksFs+   L  H  +H
  Oropetium_20150105_07662A  88 FKCSVCGKSFSSYQALGGHKTSH 110
                                89**********99998888777 PP
2zf-C2H212.40.00047168190123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C+k F++   L  H r+H
  Oropetium_20150105_07662A 168 HRCSICHKEFPTGQALGGHKRKH 190
                                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-488110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-988110No hitNo description
PfamPF139126.0E-1388111IPR007087Zinc finger, C2H2
SMARTSM003550.004688110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.86388115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-9163190No hitNo description
PfamPF139121.3E-12167192IPR007087Zinc finger, C2H2
SMARTSM003550.043168190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058168190IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDLLHAVLPE QQHHREEVMT TSSSAATSGD EGSHVPQGWA KKKRSRRQRS EEENLALCLL  60
LLSRGGNHRV QAPPPAPEPL AAASTAEFKC SVCGKSFSSY QALGGHKTSH RIKLPTPPAA  120
GPIVEAPVPI TAVPPPAVAE LREPATSSTA ASSDGGATTT TTTASRVHRC SICHKEFPTG  180
QALGGHKRKH YDGGAGSNSA AASASAEVLL PTAAAAAAAA ETSEVGSSSA ARAFDLNLPA  240
VPEFVWRCAN KAGKMWEDDE EVQSPLAFKK PRLLMTA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07662A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-108zinc finger protein 1
SwissprotQ424304e-95ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Y0SZ201e-113A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein
STRINGSb01g007170.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-21salt tolerance zinc finger