PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07509A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 291aa MW: 31799.4 Da PI: 5.1004

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07509A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	3.9e-08	108	152	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L l+ + K +K +i++ A YI++L Oropetium_20150105_07509A 108 HMMRERQRREKLSQSYADLYALVAAR-----SKGDKNSIVQSAAMYINEL 152 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.801	103	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-12	103	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.40E-7	107	157	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-10	107	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-5	108	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-4	109	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MQMDSYYYAG GLHDEFPCFY PPGGAPPPAS PELPSFGFDS SSQLVDAPTT DAALIMDYYG 60 APEAINAAAG PRQGSCGVDD QSQIRGEEVD ERRQRRPGAV ESSRGFRHMM RERQRREKLS 120 QSYADLYALV AARSKGDKNS IVQSAAMYIN ELKCAREQLQ RRNDELKAKL LGHDARQPSV 180 KVDFEVDDPA SGVDSMIGAL RRLKSMGVKA RGIRSSMSGG RLWTEMNIET TIAACEVEKA 240 VEEALVEEVE RKQQQQPQQP DSDGAASFPG TTTSSSSWGP QASTHVQNVF *

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07509A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794972.1	1e-116	transcription factor BHLH148-like
Swissprot	Q75KV9	2e-92	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A2S3II72	1e-114	A0A2S3II72_9POAL; Uncharacterized protein
STRING	Si036716m	1e-110	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	7e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07509A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]