PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07257A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 160aa MW: 17078 Da PI: 10.7881

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07257A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.1	6.9e-12	68	126	2	60
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l+ Oropetium_20150105_07257A 68 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAELEQRVSTLQNENNTLR 126 78899*************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-13	67	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-10	68	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.162	69	132	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-12	72	129	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-16	72	131	No hit	No description
CDD	cd14704	9.88E-16	72	122	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MHVESTAVVE SDEEIRRVPE IGSGASASSG AVGDERAKED GKPAQQVAGA QGQAPATGKK 60 RGRTAGDKEQ NRLKRLLRNR VSAQQARERK KAYLTELEAK AKDLELRNAE LEQRVSTLQN 120 ENNTLRQILK NTTAHAGKRA GGGGAKGGDS GKKHHFTKS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07257A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017937	1e-122	BT017937.1 Zea mays clone EL01N0520G04.c mRNA sequence.
GenBank	EU976642	1e-122	EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815107.1	9e-68	transcription factor HY5-like
Refseq	XP_025815108.1	9e-68	transcription factor HY5-like
Swissprot	Q9SM50	2e-42	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A3L6SSD3	4e-70	A0A3L6SSD3_PANMI; Transcription factor HY5-like
STRING	Pavir.Eb00436.1.p	3e-68	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	5e-38	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07257A

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]