PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07011A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 297aa MW: 31740.6 Da PI: 6.5884

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07011A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.7	5.9e-31	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C+++Cv++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+ Oropetium_20150105_07011A 4 SCNGCRVLRKGCSDNCVIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLISAGPENVRPAIFRSLLYEACGRMLNPVYGSVGL 87 6***********************99**************************************************** PP DUF260 80 ilklqqqleqlkaelallk 98 ++++++ql+q+++e +l++ Oropetium_20150105_07011A 88 LWSGNWQLCQAAVENVLRG 106 **********9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.955	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCV IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLISAGPEN 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ENVLRGMPIT NSPPAACTAV 120 VPPLKTCDIR HVARRGGDHG DIIHRVDNSS RVQFKRQSGG AQKSGTAIEL VFSRPSSAVL 180 GDVWQAQPLS WAPAGGKPSP QEYSAASHDA VPETDSSDTS VDTVEVSHVS HQSDEPEAPP 240 ATDTDGREVV GLDLALGLLP TTAHKIEPSS DVDDDQHYHR GDPVNNIGLG VTAWRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07011A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	1e-102	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008673774.1	1e-124	LOB domain-containing protein 40
TrEMBL	A0A3L6FJQ3	1e-124	A0A3L6FJQ3_MAIZE; LOB domain-containing protein 41
STRING	Pavir.Ea00650.1.p	1e-124	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	3e-71	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07011A