PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07000A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 279aa    MW: 29380.5 Da    PI: 5.4506
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07000AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-14137846
                               HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Oropetium_20150105_07000A  1 EQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 37
                               7899***********.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.11E-10145IPR009057Homeodomain-like
SMARTSM007174.4E-7141IPR001005SANT/Myb domain
PfamPF002491.2E-12137IPR001005SANT/Myb domain
PROSITE profilePS5129421.939143IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-16138IPR009057Homeodomain-like
CDDcd001672.81E-11137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
EQLLILELHS KWGNRWSRIA QHLPGRTDNE IKNYWRTRVQ KQARQLRVDA NSPVFRDAVR  60
CYWMPRLLEK MAAATSAHHD MSHVELDPAA APLHHYPHAS MAASSNLPVH GGSQHSQPHD  120
APAISGGGCY YQHVVEPSPS TSTSGSGSTS AALPAVPCFS ELSWVDQQQY CGGADPCSEL  180
GAFDSAALGS LGLDGLDLGA ADCGYSDSTL LDYLNATSSG SAAAMTMMLG GGGNVVNDAT  240
EGGACYYGGG SITWRMEDEL CQAAARKLGD GGEWGGGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07000A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794278e-99HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643700.11e-83PREDICTED: transcription repressor MYB4-like
TrEMBLJ3KW193e-82J3KW19_ORYBR; Uncharacterized protein
STRINGPavir.Ea00660.1.p3e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.17e-38myb domain protein 62