PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06913A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 292aa    MW: 31043.8 Da    PI: 8.3078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06913AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.6e-09209250955
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Oropetium_20150105_06913A 209 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 250
                                589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-12201258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-12201261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-11202254No hitNo description
SMARTSM003532.5E-10206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-6210250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAQANKRANV AAVTVPQLRP VMYDDEPSSM SLELFGYNGV VVGGDHDISA GAALPGGLQL  60
AFDENFKGGP GDDYYSWTCY GGGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXDCA  120
MWMDAAAGMV VDHPAACNNF GFLSPAGASS ADHTGREIQG PAKAAQKRAR PVGEVHAAGA  180
KKQCGGGRKS KANKTAAPSP TKDPQSVAAK VRRERIAEKL KVLQDLVPNG TKVDLVTMLE  240
KAITYVKFLQ LQVKVLAADE FWPAQGGKAP ELSQVKDALD AILSSQQSTA K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06913A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819067.11e-98transcription factor bHLH83-like
TrEMBLA0A1E5W9541e-103A0A1E5W954_9POAL; Transcription factor bHLH83
STRINGPavir.Eb00817.1.p4e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-50ROOT HAIR DEFECTIVE6