PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_06889A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 24733.7 Da PI: 8.2608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 1.9e-09 | 45 | 93 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +e+Er+RR++++s ++L +l+Pk psk ++ L A YIk+L Oropetium_20150105_06889A 45 KEIERKRRQHMKSLCAKLVSLIPKEH-HPSKDtMTQLGSLDVAAAYIKKL 93 79**********************64.555556***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-10 | 30 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.68 | 39 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.02E-5 | 44 | 98 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-12 | 44 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.5E-7 | 45 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-6 | 45 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MKAKKRSSTD NTAAAAAADD GGKRGGSTSN NSGSSGTTAP VVERKEIERK RRQHMKSLCA 60 KLVSLIPKEH HPSKDTMTQL GSLDVAAAYI KKLKERVEDL QQKRSSAQLL ASVRGGGSSS 120 AAAVATTTTS SDAGSSEEEA AAAAEDESVA PVVEVRHHQD ESSLDVVLIC SVENPFKMHE 180 VVTVLEEEGA EIINANFSVA GRKIFYTIHS RAFSSRIGIE VSRISERLRA LT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 52 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_06889A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818432.1 | 2e-85 | transcription factor bHLH162-like | ||||
TrEMBL | A0A3L6QVK6 | 6e-86 | A0A3L6QVK6_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ea00786.1.p | 1e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 3e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_06889A |