PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06798A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 394aa    MW: 41142.1 Da    PI: 8.3604
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06798AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52251551129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelv++yL +k  ++ +   ++++evd++++ePw+Lp+++k +ekewyfFs rd+ky+tg r+nrat++gyWk
  Oropetium_20150105_06798A  25 LPPGFRFHPTDEELVSFYLVRKSLDSGFCG-RAFAEVDLNRCEPWELPERAKMGEKEWYFFSLRDRKYPTGLRTNRATAAGYWK 107
                                79*************************888.88***************99999******************************* PP

                        NAM  85 atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                atgkd+ev ++   +g+lvg+kktLvfy+grapkg+kt Wvmheyrle
  Oropetium_20150105_06798A 108 ATGKDREVRCSsagGGALVGMKKTLVFYRGRAPKGQKTCWVMHEYRLE 155
                                *********998888899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6024179IPR003441NAC domain
PROSITE profilePS5100557.71225179IPR003441NAC domain
PfamPF023651.8E-2726154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010160Biological Processformation of organ boundary
GO:0010223Biological Processsecondary shoot formation
GO:0048366Biological Processleaf development
GO:0048504Biological Processregulation of timing of organ formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MERFRSGVLG GGLDALVGSG AGGDLPPGFR FHPTDEELVS FYLVRKSLDS GFCGRAFAEV  60
DLNRCEPWEL PERAKMGEKE WYFFSLRDRK YPTGLRTNRA TAAGYWKATG KDREVRCSSA  120
GGGALVGMKK TLVFYRGRAP KGQKTCWVMH EYRLEGTYAY NHFPGSTRDE WVIARVFQKP  180
GEVPPARKNN RLVGLASGGD ASCFSDSTSA SVGGGGASAS SAPPRPLVTD ASSLFAAADG  240
GETGAAAGSY GYGANNSNLV TGRELVPCFS TATTDAATLG IGQYNAPAPL AIEPPPPPPP  300
QAFFTGLRSL HDTSNSNGSI HHLPLFLSSG ASSALMMSGG GGGGAHHHHH WGPLSAGMDA  360
VKIEGGVSVG RALAPPQMAV GPGQLDGAYA WGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-512517917165NO APICAL MERISTEM PROTEIN
1ut4_B7e-512517917165NO APICAL MERISTEM PROTEIN
1ut7_A7e-512517917165NO APICAL MERISTEM PROTEIN
1ut7_B7e-512517917165NO APICAL MERISTEM PROTEIN
3swm_A8e-512517920168NAC domain-containing protein 19
3swm_B8e-512517920168NAC domain-containing protein 19
3swm_C8e-512517920168NAC domain-containing protein 19
3swm_D8e-512517920168NAC domain-containing protein 19
3swp_A8e-512517920168NAC domain-containing protein 19
3swp_B8e-512517920168NAC domain-containing protein 19
3swp_C8e-512517920168NAC domain-containing protein 19
3swp_D8e-512517920168NAC domain-containing protein 19
4dul_A7e-512517917165NAC domain-containing protein 19
4dul_B7e-512517917165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00562DAPTransfer from AT5G53950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06798A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302374.11e-135protein CUP-SHAPED COTYLEDON 1
RefseqXP_025812735.11e-135protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A3L6RXJ31e-145A0A3L6RXJ3_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
STRINGOPUNC06G13130.11e-140(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99403543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-81NAC family protein