PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06731A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 328aa    MW: 35246.2 Da    PI: 8.3681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06731AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.3e-29128186259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D ++WrKYGqK++kgs++prsYYrC++  +C+++k+ve ++ dp  ++itY+geH h+
  Oropetium_20150105_06731A 128 ADPWAWRKYGQKPIKGSPYPRSYYRCSTDkDCKARKQVESCRADPANLVITYTGEHSHP 186
                                699***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.746122188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-28125188IPR003657WRKY domain
SuperFamilySSF1182904.18E-25126188IPR003657WRKY domain
SMARTSM007747.7E-34127187IPR003657WRKY domain
PfamPF031065.1E-24129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEGDLGWWRG GSSNNNWDLH AVVRFACGGA GQGAPSSPPP SDRDISSPSS WQQQLISDPP  60
VDDLRQALSM EPPKPETAAS PRTEEPRIQQ PTPAGKAPAA KTRYKRRKKK SQVNKEVRRV  120
PAGGTASADP WAWRKYGQKP IKGSPYPRSY YRCSTDKDCK ARKQVESCRA DPANLVITYT  180
GEHSHPVPLH RNSLAGTTRG AGKSQKTPPS SPPAEESQHQ QALSDPAGLS PSLADDTNTS  240
RGSSPFVCAS GLLSPCWTPP SVGVDEDDVM FFPKPSEPQQ GAVIPFVDDD KFPVSDLEAA  300
SANQQASHFS PSSLPVLPLG VHQEMRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-161291881977Probable WRKY transcription factor 4
2lex_A4e-161291881977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06731A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686097e-72BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700890.11e-67WRKY transcription factor 22
TrEMBLA0A1E5VAE71e-67A0A1E5VAE7_9POAL; WRKY transcription factor 22
STRINGPavir.J27189.1.p4e-68(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-35WRKY family protein