PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06388A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 698aa    MW: 74162 Da    PI: 4.2045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06388AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00153558123
                               EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                               +kC+ C+k  s+ s ++ H    H
  Oropetium_20150105_06388A 35 FKCHVCHKKLSTASGMTIHVLQvH 58
                               89*****************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.091665IPR003656Zinc finger, BED-type
SMARTSM003552.81134IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
SMARTSM003550.13558IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
PRINTSPR012177.6E-12218230No hitNo description
PRINTSPR012177.6E-12266282No hitNo description
PRINTSPR012177.6E-12289306No hitNo description
PRINTSPR012177.6E-12310335No hitNo description
SMARTSM007682.9E-46610694IPR012946X8 domain
PfamPF079839.9E-22610681IPR012946X8 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MGKKKKRVDK VFCYYCDREF DDEKILVQHQ KAKHFKCHVC HKKLSTASGM TIHVLQVHKE  60
SVTKVPNAKA GRESTEIEIF GMQGIPADVL AAHYGEGAGA VASPPSVANN KQSGTQPATN  120
EVYLVWDDEA MSMEERRLSL PKYQVHDETS QRYGSNADNI LPVAAVTVMY AAMDGSNAYY  180
AWRLFCIFFF LAAAFVQCGA RVLRPDDDML QLDHYDSPSS PYYSTPIMPP YGDAFAPPND  240
TPPPHGHDSP NCGGLXXXXX XXXXXASVIP TPAFSYSSPP PPPPYISPNP PPPDISPSPS  300
PPTETPPFPP VVYPSPPEVT PPSPPEIAPP PEVTPSPPEI APIPSPSPPE VAPSPPEVSP  360
SPPESTPFPP IVYPSPPEVT PSPPEIAPNP SPPEIAPYPS PPEVSPSPPE IAPYPSPPEV  420
TPSPPEIAPY PSPPEVTPSP PEISPSPPEI VPSPPNYEPS PPSIVPSPPE YAPEPPSYVP  480
SPPVYAPAPP EYEPTPPGYT PEPPAYEPSP PEYAPEPPAF VPSPPIYAPY PPGIIPSPPE  540
NAPPGIVPSP PEYAPEPPVY APYPPGIVPG PPENAPEPPG EVPGAPGGFM PPVVFPPPFA  600
GASPGTQGGT WCVAKKAVPG QIIQQAMDYA CGSGADCDSI QPSGPCYQPD TMEAHASYAF  660
NSYWQRTKAN GANCDFGGTA MLVTKDPSYD GCHYIFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jon_A3e-196096941196Beta-1,3-glucanase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06388A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679971e-115AK067997.1 Oryza sativa Japonica Group cDNA clone:J013127D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698757.21e-133extensin
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63551318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.16e-53C2H2 family protein