PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06295A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 146aa    MW: 16328.9 Da    PI: 4.182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06295AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.11.1e-1226566128
                        NAM  66 kkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ++y+ g+r+ r +   g+Wk+  k+++++ ++++++g+ ++L+f  g++p+g +t+W m+ey++
  Oropetium_20150105_06295A   2 RRYPFGSRPARgVKGVGFWKSNTKETDIVLNDNTVIGTVTSLTFELGHQPHGIQTSWKMKEYSV 65 
                                578899*****88889**************9*******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.644188IPR003441NAC domain
SuperFamilySSF1019413.27E-12270IPR003441NAC domain
PfamPF023659.8E-51465IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MRRYPFGSRP ARGVKGVGFW KSNTKETDIV LNDNTVIGTV TSLTFELGHQ PHGIQTSWKM  60
KEYSVPEKRY SCNGLNMRDT DVPEGYEDGM TVEQGDEQAN TADEGVGEVE VDSNTQIMPV  120
DWSLSNFEED LSVDDYIVSD PTERR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06295A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.13e-12NAC domain containing protein 86