PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06183A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 289aa MW: 31586 Da PI: 6.2466

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06183A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.4e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHe+Fveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Oropetium_20150105_06183A 23 RQRLRWTNELHEKFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 77 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.492	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-32	22	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-18	22	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	24	78	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-23	110	155	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MMLGADNMGS GNGANNNANM AARQRLRWTN ELHEKFVEAV TQLGGPDRAT PKGVLRIMGV 60 QGLTIYHVKS HLQKYRLAKY IPDSSTDGNK ADNKDPGDLL AGLEGSSGLQ ISEALKLQME 120 VQKRLHEQLE VQRQLQLRIE AQGKYLQKII EEQKRLTGVK PEVPVAGASV TVSSNEQFPD 180 SERTEPSTPA PISESPAQGA SNRDNGGQTE APKSPCHDDS LSHHEPLTPD SNRQPGSPTS 240 SPNHERAAKR QRNDGTELLE GDFPLTRHIF ESSSGTEFEQ YPMSYLGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06183A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152613.1	1e-174	MYB-CC type transfactor
Refseq	XP_023156307.1	1e-174	MYB-CC type transfactor isoform X1
Swissprot	Q9SJW0	1e-100	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A3L6DZW5	1e-173	A0A3L6DZW5_MAIZE; Myb family transcription factor PHL7
TrEMBL	B4F7W7	1e-173	B4F7W7_MAIZE; MYB-CC type transfactor
TrEMBL	K4JRK4	1e-173	K4JRK4_MAIZE; G2-like transcription factor (Fragment)
STRING	GRMZM2G173943_P02	1e-173	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-84	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06183A