PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06112A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 304aa    MW: 33197.8 Da    PI: 6.9823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06112AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.8e-27109169158
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+v+rs+edp+++++ Y g+H++
  Oropetium_20150105_06112A 109 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCMATKQVQRSDEDPTLFDVFYVGTHTC 169
                                59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-2796169IPR003657WRKY domain
PROSITE profilePS5081121.746104167IPR003657WRKY domain
SuperFamilySSF1182907.85E-25108169IPR003657WRKY domain
SMARTSM007743.0E-38109171IPR003657WRKY domain
PfamPF031063.4E-26110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESCDGNGGN RLLMTELSRI KELVMQLKGH LGGSYDLCKH LTTQIFSLTE RSIGIITSAD  60
FDGARKRSAA DAGLTRVPSS LKTTKKRKIM EKRKNQVRVS SAGGGEPPVD DGHSWRKYGQ  120
KEILGAKHPR GYYRCTHRHS QGCMATKQVQ RSDEDPTLFD VFYVGTHTCC GHKTATASLT  180
LSVKTEELLR GAGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXFSAPST SDNCGASPAT  240
SDSNHVACFV PPLEAGEWRA QSELQEVVSA LVIAGTPPPV LGMDITDDDE LPDIDIDILN  300
FFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-23109169868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06112A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586252e-59KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-100probable WRKY transcription factor 30
TrEMBLA0A2S3GYW52e-98A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p3e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-38WRKY DNA-binding protein 46