PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06110A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 336aa    MW: 35734.9 Da    PI: 6.3448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06110AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.38.4e-20124184158
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---E...EEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvk...kkversaedpkvveitYegeHnh 58 
                                +dDg++WrKYGqKe+ g+++pr+YYrCt+++ +           +edp++++++Y g+H++
  Oropetium_20150105_06110A 124 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRNSKXXxxxXXXXXXDEDPTLFDVIYLGTHTC 184
                                59****************************6665411145667889*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-19118185IPR003657WRKY domain
SuperFamilySSF1182902.22E-17121184IPR003657WRKY domain
SMARTSM007742.4E-21124186IPR003657WRKY domain
PfamPF031064.8E-18125184IPR003657WRKY domain
PROSITE profilePS5081115.835125182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDSVHGNNNG SCRLVVTELS HIKQLVTQLD VHLGESPDLC KRLASQIFSL TERSIGIITS  60
SSYNLDGGRK RSAADTGFAS ATPSPLSDVV DAPFKTNKKS RKTMEKRTIQ VRVSSGGSET  120
PTPVDDGHSW RKYGQKEILG AKHPRGYYRC THRNSKXXXX XXXXXXXDED PTLFDVIYLG  180
THTCVHNKTA TATVAGGQAT RPAAAERNPD AHSLLQNLSA SLTVKTEGLH VAAEGQGWSA  240
SAATTPFCFS STPASAGPSP FSAPSTSENW GVSPATSDSN YVASPFLPSF ELRAQSELQE  300
VVSAIVAASA PAAPALDSGD EFLDLDDFDI TSFLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-16124184868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06110A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-118probable WRKY transcription factor 30
TrEMBLA0A2S3GYW51e-117A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-28WRKY DNA-binding protein 46