PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06083A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 518aa    MW: 56401.2 Da    PI: 8.0639
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06083AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.4e-28111170159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rsaed ++++ +YegeHnh 
  Oropetium_20150105_06083A 111 VKDGYQWRKYGQKVTRDNPYPRAYFRCAYApSCPVKKKVQRSAEDDTMLVAHYEGEHNHA 170
                                58***************************99****************************7 PP
2WRKY57.72.4e-18363404141
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 
                                ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkk e++
  Oropetium_20150105_06083A 363 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKGEHN 404
                                58***************************99******98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-27105171IPR003657WRKY domain
PROSITE profilePS5081125.488106169IPR003657WRKY domain
SuperFamilySSF1182903.01E-24107170IPR003657WRKY domain
SMARTSM007741.5E-33111171IPR003657WRKY domain
PfamPF031061.8E-23112169IPR003657WRKY domain
SuperFamilySSF1182901.83E-15361408IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-16363403IPR003657WRKY domain
SMARTSM007744.9E-15363407IPR003657WRKY domain
PfamPF031061.8E-13364403IPR003657WRKY domain
PROSITE profilePS5081116.926365404IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDRGRCSSPT PITPGSSAGL LPLFGPSVPP ASIEEKLRRV SEENRRLSCA LDAILADRHH  60
PHLRNAPATD HQENLVVATA AVVTTTGAEP LPRVRTVRAR AKPSDAEANY VKDGYQWRKY  120
GQKVTRDNPY PRAYFRCAYA PSCPVKKKVQ RSAEDDTMLV AHYEGEHNHA QCAQQNEFAA  180
SDASTSHQST GSLPCSISIN STGRTITLGL TNQALGSTNE TTPPAVNGDL EAPEFRKVLV  240
DEMVDFLKND PEFMESLTSA VTARMMERAR TLEAKLTQVS EENRRLTEMI AHLYATQIVA  300
NAGKKRERES PEPSHSCDDG GNSNRKSDAD HAESTDGSAS CKRIKVRRVC TRIDPADATC  360
LSVKDGYQWR KYGQKVTRDN PSPRAYFRCA FAPSCPVKKK GEHNHPCPTR ELPAGELPVS  420
RGATRSSSVP CSISINSAGP TITLDLTKNG RAGGVHVLEA TDHAREAPEQ DLKKLCREIA  480
SPEFRTALVE QMASALTSDS NFTGALAAAI LQQLPEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181111691471WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06083A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462384.11e-109WRKY transcription factor WRKY76
SwissprotQ6IEK51e-101WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A1E5UTC41e-174A0A1E5UTC4_9POAL; Putative WRKY transcription factor 40
STRINGSb02g024760.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-41WRKY DNA-binding protein 40