PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05550A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 576aa    MW: 61372.1 Da    PI: 6.3677
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05550AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.5e-33379437159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Oropetium_20150105_05550A 379 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 437
                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-37364439IPR003657WRKY domain
SuperFamilySSF1182905.1E-29371439IPR003657WRKY domain
PROSITE profilePS5081137.883374439IPR003657WRKY domain
SMARTSM007743.3E-38379438IPR003657WRKY domain
PfamPF031062.2E-25380437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MAGTSDHGSL MEDWMPPPTP SPRTLMSSFL NEEFSSSSVS NLFSDPGNRQ PLDRSAESRE  60
SVNLSAEVSA HAAKATFQKD FSLEPNVFSA IQKSNSPGGL AERRAARAGF SVSKIDTSRV  120
GAPTVTRSPV SIPPGLSPTA FLESPVFLHN KMAQPSPTTG KLPFLVATDS NSTILPAAKM  180
TENCTIDNDI FSFQPHIGSK GFSTSEKDYG AYQQNQSFSS FDQQGSILQS NFVSVKNDSD  240
QRTVKPVTSD SMFHYSAGEQ VNDEANQNLQ AEDIEARPAA CLPVPAHGGA SMIESQDAID  300
VSSTLCNEEE ERVTHGTVSA ECDGDEDETE SKRRKIDSLD AATITTAATT SAIDMGGAGS  360
RSVREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTHQGC SVRKHVERAS  420
HDLKSVITTY EGKHNHEVPA ARNSGQSGSG SGSAPSAAQA SHRRQEPSHG NFAHFGGTAS  480
FGSLVLPPRG HLGPAAGSFH FGMVPPGMAI PIPSLASLAP TKMIQNSPAM QGYPGPMMPG  540
EMKAEPVLQS SFPTGNAAPS AYRQMMSRPP FGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33370440878Probable WRKY transcription factor 4
2lex_A1e-33370440878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05550A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802032.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLA0A1E5WJ690.0A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRINGPavir.J40119.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-54WRKY DNA-binding protein 2