PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05510A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 526aa    MW: 58338.8 Da    PI: 7.5406
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05510AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-11209252141
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                                e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Oropetium_20150105_05510A 209 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 252
                                6777999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.7E-8207257No hitNo description
SMARTSM003381.9E-7209300IPR004827Basic-leucine zipper domain
PfamPF001703.5E-8210252IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082211253IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-7213254No hitNo description
PROSITE patternPS000360216231IPR004827Basic-leucine zipper domain
PfamPF141444.6E-28309383IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MVSGSSLKEQ QQEMNISFGM NHHHNQPPSS SSSSSMHAAA ASFMTSSKEA SGAYDHLGEL  60
DQALFMYLDH GSHGGSTHQE QRRKSSVACI LTQALALFLV LFMDAETLNI FPSQPMHVEP  120
SPKGEISLVL SPAPVGSKLP RSPDHLHXXX XXXXXXXXLA GSRRQDHHHH HLQHQPFAAA  180
ADQATGAGIK DVKPVANKKE HKRGAATGER DPKTLRRLAQ NREAARKSRL RKKAYIQQLE  240
SSRIRLAQLE QELHTARAQG VFYPGSGLLA DPGVAGKGIP ISGIDGLSSE AAMFDVEYGR  300
WQEEHYRLMY ELRAALQQHL PEGELQMYVE SCLAHHDEMI GIKDGVIKGD VFHLISGVWK  360
SPAERCFLWL GGFRPSEVIK MLLSHVEPLT EQQIVGVYGL QQSALETEEA LSQGLDALYQ  420
SLSDAVVSDS LSCPSNVANY MGQMAAAMNK LSTLEGFVRQ AENLRQQTLH RLHQILTTRQ  480
MARSLLAVSD YFHRLRTLSS LWVTRPRAPH QEQXXXXXXX XXXHT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05510A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651077.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ52MZ21e-168TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1D6I6Z40.0A0A1D6I6Z4_MAIZE; BZIP transcription factor family protein
STRINGGRMZM2G006578_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-137bZIP family protein