PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05464A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 367aa MW: 39897.2 Da PI: 9.3062

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05464A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.8	7.1e-56	24	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk Oropetium_20150105_05464A 24 LPPGFRFHPTDEELITYYLRQKLADGSFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWK 106 79***********************999.89***********99999*************************** PP NAM 85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkdke+++ ++elvg+kktLvfykgrap+gekt+Wvmheyr+ Oropetium_20150105_05464A 107 TTGKDKEIFTGqlpaTQELVGMKKTLVFYKGRAPRGEKTNWVMHEYRV 154 *****9888888888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-64	20	175	IPR003441	NAC domain
PROSITE profile	PS51005	60.881	24	175	IPR003441	NAC domain
Pfam	PF02365	5.1E-29	25	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MSMEGSAGTA AAGGGGSSKK EESLPPGFRF HPTDEELITY YLRQKLADGS FTARAIAEVD 60 LNKCEPWDLP EKAKLGEKEW YFFSLRDRKY PTGVRTNRAT NAGYWKTTGK DKEIFTGQLP 120 ATQELVGMKK TLVFYKGRAP RGEKTNWVMH EYRVHSKSAS KSNKDEWVVC RVFAKSAGVK 180 KYASNNAHSR SHHHHHHHPY ATLDMVPPLL PTLLQHDPFA RHHHHPYMTP ADLAELARYA 240 RGTPGLHPHI QPHPGGFINP AATPPFALPG LNLNLGASPA TMPSPQPALH AAMTSSMAAP 300 SGGAVLAGHQ VMVSEQQQMA PGLCGGVMAP GGAGPDAGFA GTDGVRYQNL DLEQLVERYW 360 PAGYQV*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MSMEGSAGTA AAGGGGSSKK EESLPPGFRF HPTDEELITY YLRQKLADGS FTARAIAEVD  60
LNKCEPWDLP EKAKLGEKEW YFFSLRDRKY PTGVRTNRAT NAGYWKTTGK DKEIFTGQLP  120
ATQELVGMKK TLVFYKGRAP RGEKTNWVMH EYRVHSKSAS KSNKDEWVVC RVFAKSAGVK  180
KYASNNAHSR SHHHHHHHPY ATLDMVPPLL PTLLQHDPFA RHHHHPYMTP ADLAELARYA  240
RGTPGLHPHI QPHPGGFINP AATPPFALPG LNLNLGASPA TMPSPQPALH AAMTSSMAAP  300
SGGAVLAGHQ VMVSEQQQMA PGLCGGVMAP GGAGPDAGFA GTDGVRYQNL DLEQLVERYW  360
PAGYQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	23	181	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	23	181	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	23	181	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	23	181	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-56	23	181	19	174	NAC domain-containing protein 19
3swm_B	5e-56	23	181	19	174	NAC domain-containing protein 19
3swm_C	5e-56	23	181	19	174	NAC domain-containing protein 19
3swm_D	5e-56	23	181	19	174	NAC domain-containing protein 19
3swp_A	5e-56	23	181	19	174	NAC domain-containing protein 19
3swp_B	5e-56	23	181	19	174	NAC domain-containing protein 19
3swp_C	5e-56	23	181	19	174	NAC domain-containing protein 19
3swp_D	5e-56	23	181	19	174	NAC domain-containing protein 19
4dul_A	4e-56	23	181	16	171	NAC domain-containing protein 19
4dul_B	4e-56	23	181	16	171	NAC domain-containing protein 19
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_05464A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660793.1	0.0	PREDICTED: NAC domain-containing protein 92-like
TrEMBL	A0A3L6QN81	0.0	A0A3L6QN81_PANMI; Uncharacterized protein
STRING	OMERI07G04420.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-94	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05464A