PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05438A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 429aa    MW: 45106 Da    PI: 8.0389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05438AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.32.7e-122492892158
                                -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                 rsYYrCt++   gC +kkkv+r ++dp v e+tY g+H++
  Oropetium_20150105_05438A 249 RRSYYRCTHKnyyGCDAKKKVQRLDDDPFVYEVTYCGKHTC 289
                                69*******99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.4E-9246291IPR003657WRKY domain
SuperFamilySSF1182906.15E-11248289IPR003657WRKY domain
PfamPF031061.2E-11249289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-12249289IPR003657WRKY domain
PROSITE profilePS5081111.6250287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MHVLARHRPA PHPFIKLDLR DTLSIEQRIV SGGGGQLLGS SSGATTMDDV LSQIHEAFRL  60
AGELMSELPA TQNDPAYLAE RCHGIAQAYX XXXXXXXXXP HGGGGGGGGD DAAAWAAPPP  120
PPFAGDRLLR LWRRPDNDDD EASGASKANN PFLGSSSPSS SQLICMGRLL EPSSFHTPAE  180
TMVRAAAGAA DVAGTSGGPI RRTAPSSSSR GSPPNQPRRG RRRRESGERL TVMMKKKVNT  240
LSVCCKIIRR SYYRCTHKNY YGCDAKKKVQ RLDDDPFVYE VTYCGKHTCL TSTTPLLTLP  300
AATTSITAGG TNSPTANNSS APAILAHQDL AMVATTEHHP APPAPLSTAI QLGIRWMPSD  360
LVGASSSAGA GAGPGEGSGA VQVNVPTTGN GREMEYPLMD LADAMFNSGS SGGSSMDGFF  420
SSHDPRDR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217224RRGRRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05438A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1362243e-59AC136224.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0006B22, complete sequence.
GenBankAC1362273e-59AC136227.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0109A13, complete sequence.
GenBankAK2878173e-59AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
GenBankAP0149613e-59AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-59CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681211.17e-90probable WRKY transcription factor 53
TrEMBLA0A2S3HD542e-86A0A2S3HD54_9POAL; Uncharacterized protein
STRINGSi025307m3e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.22e-15WRKY DNA-binding protein 55