PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT2G40740.2 | ||||||||
Common Name | ATWRKY55, WRKY55 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 27467.2 Da PI: 8.4213 | ||||||||
Description | WRKY DNA-binding protein 55 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 45.4 | 1.6e-14 | 147 | 188 | 20 | 58 |
S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 r+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H++ AT2G40740.2 147 RRRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTC 188 4599*******999**************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 9.1E-11 | 138 | 190 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-14 | 144 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-13 | 146 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-13 | 147 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.153 | 149 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM 60 LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR YGGSTSSQGT EAMFQTQLMA 120 VDGGGERNLT AAVERSGASG SSTPRQRRRA YYRCTHQKLY NCPAKKQVQR LNDDPFTFRV 180 TYRGSHTCYN STAPTASSAT PSTIPISSVT TGHSVDYGLA VVDMADVMFG SGGVGTNMDF 240 IFPKNDPS |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 266052_at | 1e-125 | ||||
Expression Atlas | AT2G40740 | - | ||||
AtGenExpress | AT2G40740 | - | ||||
ATTED-II | AT2G40740 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group III | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00304 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT2G40740.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT2G40740 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ056574 | 0.0 | DQ056574.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001078033.1 | 0.0 | WRKY DNA-binding protein 55 | ||||
Swissprot | Q9SHB5 | 1e-179 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | Q4PSR2 | 0.0 | Q4PSR2_ARATH; WRKY DNA-binding protein 55 | ||||
STRING | AT2G40740.1 | 1e-178 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT2G40740.2 |
Entrez Gene | 818669 |
iHOP | AT2G40740 |
wikigenes | AT2G40740 |