PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05437A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

WRKY

Protein Properties

Length: 294aa MW: 30975.1 Da PI: 6.6987

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05437A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	75	9.1e-24	90	150	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+++s++p++Y+rCt++ +C+++++v+r+++ p+ + +tY g H+++ Oropetium_20150105_05437A 90 EDGHAWRKYGQKEIQNSKHPKAYFRCTHKydqQCKAQRQVQRCDDAPESFRVTYIGVHTCR 150 8*************************99999***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.0E-25	79	152	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-24	83	152	IPR003657	WRKY domain
PROSITE profile	PS50811	19.313	84	152	IPR003657	WRKY domain
SMART	SM00774	1.1E-33	89	151	IPR003657	WRKY domain
Pfam	PF03106	2.3E-22	90	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
XELQPLLRDS PKAGLIVDQI LHAFSRAIDA AKAMTDQEGS EVQSEVTCAG GGGGGKRKAA 60 AAGAGDRKGG TARRRTQDSS VRMVTTNDLE DGHAWRKYGQ KEIQNSKHPK AYFRCTHKYD 120 QQCKAQRQVQ RCDDAPESFR VTYIGVHTCR DPATLAPVVV HHHDAAGVLP AGSRLISFVG 180 APNAASTPTT STTTTTTTGA GHANHHHCEG GALLSLPPLK LEGGGGGVDQ EEVLSSLTPA 240 GSARNPVATP GRVDQGDVTS GLHFLGGRGV DDLGFAMDDD TFDLDEIEQI FRI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-35	84	150	3	69	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_05437A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098522	2e-72	FP098522.1 Phyllostachys edulis cDNA clone: bphylf033j03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962450.1	5e-95	probable WRKY transcription factor 70
TrEMBL	K3Z832	1e-93	K3Z832_SETIT; Uncharacterized protein
STRING	Si022702m	2e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7656	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	5e-25	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05437A