PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_05407A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 511aa    MW: 55923.9 Da    PI: 8.3524
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_05407AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.51.8e-25202246246
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk 46 
                                +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+ 
  Oropetium_20150105_05407A 202 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGX 246
                                8***************************************99975 PP
2WRKY1079.6e-34383441159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d+++v++tYeg+Hnh+
  Oropetium_20150105_05407A 383 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDTRAVITTYEGKHNHD 441
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-21193245IPR003657WRKY domain
PROSITE profilePS5081120.587196244IPR003657WRKY domain
SuperFamilySSF1182903.79E-19200246IPR003657WRKY domain
SMARTSM007742.6E-22201251IPR003657WRKY domain
PfamPF031065.8E-18202242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-37368443IPR003657WRKY domain
SuperFamilySSF1182901.96E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.205378443IPR003657WRKY domain
SMARTSM007748.5E-40383442IPR003657WRKY domain
PfamPF031066.0E-26384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MMASSTGSLD HGGFTFTPPS FITSFTDLLS SAGDMFAGED RSPRGMFPRG AXXXXXXXXX  60
VPKFKSAQPP SLPISPPLPM SPSSYFAIPX XXXXXXXXXX XXXLTSASSF LASPTTGAIP  120
AQRFDWKQQA AAAADNNNRA AGAAAGGFSS SDFSFHTAAF PSSFNKKQEQ QEAVEAVPAS  180
SNNTAVTKSI SSGNNNSNKQ LEDGYNWRKY GQKQVKGSEN PRSYYKCTYH SCSMKKKVER  240
SLADGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXH TQMSLSAGGA  300
PEHSSATPEN SSVTFGDDXX XXXXXXXXXX DAKRWKHNHQ EDDDNSGENE XXXXXXXXXX  360
ACGNKPVREP RLVVQTLSDI DILDDGFRWR KYGQKVVKGN PNPRSYYKCT TPGCPVRKHV  420
ERASHDTRAV ITTYEGKHNH DVPVGRGGGA SRAPAPAPMA PAPVMGAGAP YTLEMLSSNN  480
NNGYGFQQQQ QRAVAKDEPR DDLFVDSLLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37374443877Probable WRKY transcription factor 4
2lex_A9e-37374443877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_05407A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570971e-101EU957097.1 Zea mays clone 1582655 WRKY53 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303401.11e-162probable WRKY transcription factor 26 isoform X2
TrEMBLA0A1E5V1I91e-167A0A1E5V1I9_9POAL; Putative WRKY transcription factor 26
STRINGSb09g015900.11e-156(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-45WRKY DNA-binding protein 33