PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04962A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 303aa    MW: 33640.8 Da    PI: 7.9267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04962AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.26.5e-4051691128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikev.diykvePwdLp.k................................ 49 
                                +ppGfrF Pt+eelv++yL+ k+eg++  ++e+vi+ v d++ ++Pw+Lp k                                
  Oropetium_20150105_04962A   5 VPPGFRFYPTEEELVCFYLRSKLEGRHgDDIERVIPVVaDVCALDPWQLPgKsssidkhcrirmqsralllnakndlvvaaeah 88 
                                69************************9777888999999***********6489*****************9999999988877 PP

                        NAM  50 ..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  +++++e+ w++F++r+++ a+g r++r+t sgyWka g+   v++++g+ +g kkt+vfy+grap g+kt+W m+eyr+
  Oropetium_20150105_04962A  89 rcACAGGEEPWFYFCPRQERVARGGRPSRTTPSGYWKAAGTPGWVYAADGRPIGSKKTMVFYRGRAPAGTKTKWKMNEYRA 169
                                7644558889*********************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-15457IPR003441NAC domain
PROSITE profilePS5100542.4085199IPR003441NAC domain
PfamPF023655.6E-236168IPR003441NAC domain
SuperFamilySSF1019411.44E-2793199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAEEVPPGFR FYPTEEELVC FYLRSKLEGR HGDDIERVIP VVADVCALDP WQLPGKSSSI  60
DKHCRIRMQS RALLLNAKND LVVAAEAHRC ACAGGEEPWF YFCPRQERVA RGGRPSRTTP  120
SGYWKAAGTP GWVYAADGRP IGSKKTMVFY RGRAPAGTKT KWKMNEYRAL EDVAAAPPPP  180
RPNALQTRSE FSLYRLYTKS GCPRQFDRRP SAADVVRRGR HNPPVASCST AVLLPIVEET  240
TMAGQKRERS PPQNDDDTSS SDGDGGGRGR CGQQQLLPPE ATTTEGFVDD TDDWTEFFLD  300
WV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-29520517171NO APICAL MERISTEM PROTEIN
1ut4_B1e-29520517171NO APICAL MERISTEM PROTEIN
1ut7_A1e-29520517171NO APICAL MERISTEM PROTEIN
1ut7_B1e-29520517171NO APICAL MERISTEM PROTEIN
3swm_A2e-29520520174NAC domain-containing protein 19
3swm_B2e-29520520174NAC domain-containing protein 19
3swm_C2e-29520520174NAC domain-containing protein 19
3swm_D2e-29520520174NAC domain-containing protein 19
3swp_A2e-29520520174NAC domain-containing protein 19
3swp_B2e-29520520174NAC domain-containing protein 19
3swp_C2e-29520520174NAC domain-containing protein 19
3swp_D2e-29520520174NAC domain-containing protein 19
4dul_A1e-29520517171NAC domain-containing protein 19
4dul_B1e-29520517171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04962A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936262e-87FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809342.11e-100NAC domain-containing protein 90-like
TrEMBLA0A3L6RBW11e-100A0A3L6RBW1_PANMI; NAC domain-containing protein 90-like
STRINGLPERR05G14390.11e-100(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-62NAC domain containing protein 90