PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_04950A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 409aa MW: 44911.3 Da PI: 8.9561 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 228 | 247 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Oropetium_20150105_04950A 228 FICNVCSKTFNRYNNMQMHM 247 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00058 | 314 | 336 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Oropetium_20150105_04950A 314 FGCRRCGKPFAVKGDWRTHEKNC 336 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.66E-5 | 226 | 253 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 228 | 247 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.346 | 228 | 255 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 230 | 250 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MVVCAMDSAA GFGGVQFFEW LKPSSSRSPP SSPSSFSAAS SGLSTLSSTV VVGDDGARLD 60 TSLCLPLLGR LDEDRAATTS PEHRGGRNNN SHNVKEEPMI SMMSSNSIAX XXXXXXXXXE 120 EEEADVELNI GLPTIGGYTY SSSEDQAAAM XXXXXXXXXX XXXXXXXXXX XXXXGHEQQH 180 VHIEMMEGSG GFVRVGGEED MIKGVISSRG RRYWIPTPAQ ILIGPVQFIC NVCSKTFNRY 240 NNMQMHMWGH GREYRKGPES LKGTQAATLA LLKLPCYCCA PGCRNGVSHP RARPLKDFRT 300 LQTHYKRKHG AKHFGCRRCG KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS 360 FGGGHLPVTA ADQQQAPPPG AAAVPKQQRI IRFDQAAPAA AWNRQTHA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_04950A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359222 | 1e-147 | AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439878.1 | 1e-144 | protein TRANSPARENT TESTA 1 | ||||
TrEMBL | C5YYT0 | 1e-143 | C5YYT0_SORBI; Uncharacterized protein | ||||
STRING | Sb09g021850.1 | 1e-144 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4472 | 36 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 3e-93 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_04950A |