PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04771A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 306aa    MW: 31929.8 Da    PI: 6.6841
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04771AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.91.1e-23189251163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                e+elkrerrkq+NRe+ArrsR+RK++e+eeL +kv+eL++eN aL+ el++lkk ++ +++++
  Oropetium_20150105_04771A 189 ERELKRERRKQSNRESARRSRLRKQQECEELGKKVAELTTENNALRAELDKLKKACQDMEADN 251
                                89********************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-18187248No hitNo description
PfamPF001708.0E-21189251IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-20189253IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.955191254IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-11192247No hitNo description
CDDcd147021.46E-19194245No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAGT AAVTAAVAVP QTHAEWAASI QAYYAAAGHP YAWPAQHLMA  60
AAAAGATYGA PVPFPVYHPG AAAAYYAHAS MAAVTAAAAA AAAAEGKGKG KGGGASPEKG  120
SSGAPSGEDA SRSGDSGSDE SSDTRDDDTD HKDSSVPKKR KSGNTSAEGE PSHAALVHYP  180
AVESPFPDER ELKRERRKQS NRESARRSRL RKQQECEELG KKVAELTTEN NALRAELDKL  240
KKACQDMEAD NSRLMEPSVT TTLGMSIEAP KPQKHDDEGQ LRKNTNNNSN GNYVGGSHKQ  300
EANTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211RRSRLRK
2205212RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04771A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0930861e-119FP093086.1 Phyllostachys edulis cDNA clone: bphyem203l01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105491.14e-97maize Em binding protein-1a
TrEMBLA0A446KY921e-122A0A446KY92_TRITD; Uncharacterized protein
STRINGGRMZM2G095078_P016e-93(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-21basic region/leucine zipper transcription factor 16