PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_04693A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 633aa MW: 68455 Da PI: 4.223 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113 | 3.2e-35 | 43 | 152 | 28 | 128 |
NAM 28 leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWkatgkdkevlskkgelv 100 l++ ++i+evd+y++ePw+Lp +++++++ +wyfF++ d+k + g+r+nrat +gyWk+tgkd+ev++ +g++v Oropetium_20150105_04693A 43 LRV-DAIAEVDLYRLEPWELPslSRIRSRDAQWYFFARLDRKITgagaggrggPGNRTNRATPQGYWKTTGKDREVHH-RGKAV 124 455.78***************5448999999***********99777777665567**********************.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvf++grapkg +t+Wvmheyrl Oropetium_20150105_04693A 125 GMKKTLVFHSGRAPKGARTNWVMHEYRL 152 **************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.688 | 1 | 170 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-39 | 41 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-15 | 62 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 633 aa Download sequence Send to blast |
MSGSSPPDSS SAEVPLAPXX XXXXXXXXXX XXXXXXXXXX RRLRVDAIAE VDLYRLEPWE 60 LPSLSRIRSR DAQWYFFARL DRKITGAGAG GRGGPGNRTN RATPQGYWKT TGKDREVHHR 120 GKAVGMKKTL VFHSGRAPKG ARTNWVMHEY RLLDADGPQD LHVVCRIFQK FGSGPQNGAQ 180 YGAPYMEEEW EEDDDSVEKG SATAAPPKVS AILDTADEES NEEDENCKTN EPAQAHEIPN 240 PPEMAALQAQ GSNETSDGSY DDGAISMEEI LSSTISAQNI VGPEGQNATD DNICVADFSE 300 APTQDNGYVV QDGTMNWTDP ANGECSNWPL RAYSNQNPVN GTLSADEFFD TGNGVNENAC 360 SGQQQICQSD YQNMNLQADG FVAPRHADDS MVFYDAPPSW GDGNNDLYLS ELLNGPFEDP 420 SLLEVNDLMD YFVDAPENDF LLGSEASDYQ LTEMLSFAQK GDDKDNSAFD GKISDAKAHY 480 GASSSGSHED LYPDTAVPVD GTADKAFGKH LVSMLGSIPA APAFATECPP ATGKSVLAGV 540 NPSSIRVTAG IIQLGGVNFT GSERGLLQKN GDFSLLLSFT METDVAAKST GFEPATRVGA 600 VPMVMRSGFY LFFVSAMILM LSYKIGSCIY SR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-29 | 41 | 152 | 40 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_04693A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT064133 | 0.0 | BT064133.1 Zea mays full-length cDNA clone ZM_BFc0140G07 mRNA, complete cds. | |||
GenBank | BT067581 | 0.0 | BT067581.1 Zea mays full-length cDNA clone ZM_BFc0097N06 mRNA, complete cds. | |||
GenBank | EU975936 | 0.0 | EU975936.1 Zea mays clone 505923 NAC domain-containing protein 78 mRNA, complete cds. | |||
GenBank | KJ726985 | 0.0 | KJ726985.1 Zea mays clone pUT3686 NAC transcription factor (NAC26) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002453065.1 | 0.0 | NAC domain-containing protein 53 isoform X1 | ||||
TrEMBL | A0A3L6RSV2 | 0.0 | A0A3L6RSV2_PANMI; NAC domain-containing protein 53 | ||||
STRING | Sb04g037720.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12931 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-49 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_04693A |