PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04335A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GeBP
Protein Properties Length: 322aa    MW: 34503 Da    PI: 9.6808
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04335AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.68.1e-14135201469
                     DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkv 69 
                                q+ ws+ De +lL + +df+++tg  p   d+ +f++ + +sis ++ +  +  K++rLK Kf++  
  Oropetium_20150105_04335A 135 QKHWSDADEFTLLNAALDFRKRTGRVPRLpDMAEFFDSIAGSISPEIDQWMVYYKLKRLKSKFQHTD 201
                                789**********************77766*********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-12135201IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSSVSAMDAD AEPAPPSSPR SRKRPSLTGD DGQSSPNPSP GGSPAAGRSA LKRKLRTSAE  60
SAALALATVA AHASAAGVVD ADADRAAAKR RGPAGVRVDD EGHGAIQMLG AAAARVDRAH  120
AAAEGPVTRG RGAGQKHWSD ADEFTLLNAA LDFRKRTGRV PRLPDMAEFF DSIAGSISPE  180
IDQWMVYYKL KRLKSKFQHT DGPSDRRLRN LCTDLWGAFP SHEDIWDGET DAEERRAAPD  240
AAAMMPVLAE VLGEYWKTNA GVMKGLPLEK GLSRLGKKQG RLLEIKWRQQ LDEEMQTQMR  300
RHELAKEVLS LLSGAIKGLG P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056LKRKLRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_04335A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954046.21e-111uncharacterized protein LOC101785158
TrEMBLA0A0A8YJH91e-116A0A0A8YJH9_ARUDO; Uncharacterized protein
STRINGSi017925m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.14e-08DNA-binding storekeeper protein-related transcriptional regulator