PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03878A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HB-other

Protein Properties

Length: 435aa MW: 45684.6 Da PI: 6.5024

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03878A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.2	4.1e-06	50	65	41	56
HHHHHHHHHHHHHHHH CS Homeobox 41 erqVkvWFqNrRakek 56 +++V++WFqNr+ + + Oropetium_20150105_03878A 50 DANVFYWFQNRKSRAR 65 79************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MYRANLACNI QQPQPHMNND VVGGKSSLMS SSMFLCLCCA PCLHYGPVAD ANVFYWFQNR 60 KSRARHKLRA AAGQPSGSAR AVLFRACAAS PPPPVTPPRH LVVPAPPVVA PASSSSSSSD 120 RSSGSGSSES VMKPATTLAS PAAGFLPAAT ALTDFLSTTR AVPALAPRQQ LYYHSQIMAP 180 TTTVLPTPPE LITSPEPLLL QWQQSHQYLX XXXXXXXXXX XHAPVVVSPS PNVLLGLSNE 240 ESSSLGQDRV NTTSSSTNKE GLGHHGQYWN DDGGVEELST KTDDAVSVVI RDDEKARLGS 300 LHYDFGVTSA TPVAAGPVHA AADAITTAAM LPSAAAPAIN NNNNADQLQA LLDLGLIGRT 360 AVPTATVVAV ARDASTTCAS TSMQFSVPAM PLDVKQFGEA AVLLRHPGEP VLVNESGITV 420 EPLQQDALYY VLVN*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MYRANLACNI QQPQPHMNND VVGGKSSLMS SSMFLCLCCA PCLHYGPVAD ANVFYWFQNR  60
KSRARHKLRA AAGQPSGSAR AVLFRACAAS PPPPVTPPRH LVVPAPPVVA PASSSSSSSD  120
RSSGSGSSES VMKPATTLAS PAAGFLPAAT ALTDFLSTTR AVPALAPRQQ LYYHSQIMAP  180
TTTVLPTPPE LITSPEPLLL QWQQSHQYLX XXXXXXXXXX XHAPVVVSPS PNVLLGLSNE  240
ESSSLGQDRV NTTSSSTNKE GLGHHGQYWN DDGGVEELST KTDDAVSVVI RDDEKARLGS  300
LHYDFGVTSA TPVAAGPVHA AADAITTAAM LPSAAAPAIN NNNNADQLQA LLDLGLIGRT  360
AVPTATVVAV ARDASTTCAS TSMQFSVPAM PLDVKQFGEA AVLLRHPGEP VLVNESGITV  420
EPLQQDALYY VLVN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03878A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809387.1	2e-94	WUSCHEL-related homeobox 12-like
TrEMBL	A0A2T7EAB2	3e-95	A0A2T7EAB2_9POAL; Uncharacterized protein
STRING	Si025013m	1e-91	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	1e-09	WUSCHEL related homeobox 8

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03878A