PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03857A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 587aa    MW: 61256.6 Da    PI: 6.41
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03857AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30338396259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  Oropetium_20150105_03857A 338 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGRHNHP 396
                                7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33322398IPR003657WRKY domain
SuperFamilySSF1182908.76E-28330398IPR003657WRKY domain
PROSITE profilePS5081130.182332398IPR003657WRKY domain
SMARTSM007741.2E-36337397IPR003657WRKY domain
PfamPF031061.4E-26339396IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MESSYVAAAG LKRKTAAIGA DDRERSSSPA AAFPAVGMCY DDDDDAGAEE RREMDFFKKE  60
KRERISEAAA DHDAVDSAPD DLRIMEDDLT INVGLHVGRR KKSGSEDSSV DDDASPNEGG  120
HRRGATKAEL ALTKDELTLT KVELERLKEE NQQLRTMLNN ANAKYHSLHA HLVAMMQQRN  180
HRGGLLAPVV HEQLNVDPEK KEQLDGGVLV PRQFISLVGG TSSAPGVDSA ATSPTSNHLG  240
LGSPTVTTTQ SSLMDYSTCG MMSLPTFDHH HCRPLHEGVS GSSAEEPPPP PPPQGWLPNK  300
VPKFLPAKGP EQATEAAAAT MRKARVSVRA LSEAPMISDG CQWRKYGQKM AKGNPCPRAY  360
YRCTMAAGCP VRKQVQRCAE DRTVLITTYE GRHNHPLPPA AMAMASTTAA ASSMLLSGSM  420
PSADGSLMAG SNFLARAVLP GLSGVATISA SAPFPTVTLD FTQPSTPPPA AAQAQPATLQ  480
SALAEAARAP APQLPQLFGQ TLYDHSKLAA VQNAAGTKVT DAGALADTVS AAAAITSDPN  540
FTAVLAAAIT SYIGSGAGAG AGGGSGRSSG ADNGCSRDDK TVDNSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22328398877Probable WRKY transcription factor 4
2lex_A1e-22328398877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03857A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807048.11e-179WRKY transcription factor 42-like isoform X1
TrEMBLA0A2S3H9N51e-178A0A2S3H9N5_9POAL; Uncharacterized protein
STRINGPavir.Ca00949.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.15e-73WRKY DNA-binding protein 31