PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_03836A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 214aa MW: 23828.5 Da PI: 5.2428 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.4 | 1.1e-26 | 68 | 127 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 Dg++WrKYGqK++ g+++pr+Y+rCt++ +C ++k+v+r++ dp +++++Y+g H++ Oropetium_20150105_03836A 68 GDGFSWRKYGQKDILGAKYPRAYFRCTHRttqSCVATKQVQRADADPLLFDVVYHGAHTC 127 5**************************998889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-26 | 54 | 128 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.149 | 62 | 125 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-24 | 63 | 127 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-37 | 67 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-25 | 69 | 127 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MENSLASHLE RVQSMVRELE ANMDQQEDLP LAAMEICGAL ASSIDRKGVP SVRTQVRVSA 60 EQDMSALGDG FSWRKYGQKD ILGAKYPRAY FRCTHRTTQS CVATKQVQRA DADPLLFDVV 120 YHGAHTCVQA AAHIATTTTE QHLQQPAGHT HAATHQEQTA GFEPMTPFPF ASTPAATELQ 180 QFRNSDAVLE LEHQLEQFFS NPSDYFQWDF QDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-19 | 67 | 127 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_03836A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY676926 | 4e-57 | AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806380.1 | 1e-67 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A3L6DU44 | 2e-68 | A0A3L6DU44_MAIZE; Putative WRKY transcription factor 53 | ||||
STRING | Pavir.J01329.1.p | 4e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 9e-34 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_03836A |