PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03807A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 493aa MW: 52219.1 Da PI: 5.2332

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03807A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	344.2	2.2e-105	71	440	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 lv+l+++cA a+++gd + a++ L +++ + a p+++ + R+a +f+ AL++rl+ s+ y a pps+t + ++ Oropetium_20150105_03807A 71 LVHLIVTCAGAIEAGDYSTAHTNLVEVHGIlgAIPTAKGIGRVADHFAGALSQRLFP--SSSYPAPPPSAT-------PAELHH 145 689***********************99999********************..444444444444.......455667 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 f+e+ P+lkf + taN aIl+a+eg++rvH++D+ ++qGlQWp +qaLa Rp+gpp+lRiTg+g+p +g+++el+ +g rLa Oropetium_20150105_03807A 146 HFYEAGPYLKFVYSTANLAILDAFEGCSRVHVVDLALMQGLQWPEVIQALARRPGGPPHLRITGIGPPMTGDRDELRDVGVRLA 229 7******************************************************************************* PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqead 247 +A++l+vpf+f+ + a++l++l++++L+v pgEala+n+vlqlhrll ++ + + ++d++L+++ +l+P v++vveqead Oropetium_20150105_03807A 230 ALAHSLNVPFSFRGVCADQLHTLRPWMLQVVPGEALAINSVLQLHRLLVDPDAAPAvpaPIDTLLDCLTGLQPSVFTVVEQEAD 313 ********************************************877766666669******************** PP GRAS 248 hnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 hn++s+lerf++al +y+a+fds+ + + +++ +++l+ ei ++v+ eg++r erhet+++Wrer+ ++G++++p++ Oropetium_20150105_03807A 314 HNNPSLLERFTNALFHYAAMFDSVvDGG---GGVGGAVLAEAYLRAEIFDIVCGEGSARAERHETVARWRERFARVGLQQLPFG 394 ********************6655...445566677777************************************* PP GRAS 331 ekaakqaklll.rkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373 +a + a l + ++ + g++v e gsl lgW++rpL++v+aW Oropetium_20150105_03807A 395 PRALDLATDRLfSLTSrtGSGFSVLECGGSLALGWQERPLYTVTAW 440 988765441444433678************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.421	45	418	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.5E-103	71	440	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MDPSAFAAFT GAVPLPSPSA ANNNNGAVYY VNPGLYASIP PHMMQPVPAA AEAEADEARR 60 RQEEEDAAIR LVHLIVTCAG AIEAGDYSTA HTNLVEVHGI LGAIPTAKGI GRVADHFAGA 120 LSQRLFPSSS YPAPPPSATP AELHHHFYEA GPYLKFVYST ANLAILDAFE GCSRVHVVDL 180 ALMQGLQWPE VIQALARRPG GPPHLRITGI GPPMTGDRDE LRDVGVRLAA LAHSLNVPFS 240 FRGVCADQLH TLRPWMLQVV PGEALAINSV LQLHRLLVDP DAAPAVPAPI DTLLDCLTGL 300 QPSVFTVVEQ EADHNNPSLL ERFTNALFHY AAMFDSVVDG GGGVGGAVLA EAYLRAEIFD 360 IVCGEGSARA ERHETVARWR ERFARVGLQQ LPFGPRALDL ATDRLFSLTS RTGSGFSVLE 420 CGGSLALGWQ ERPLYTVTAW GPTGRDAAGA VNDMGGLYYP AAAGNIPNGT TSTESYGWGN 480 LAATQAAAFI MP*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MDPSAFAAFT GAVPLPSPSA ANNNNGAVYY VNPGLYASIP PHMMQPVPAA AEAEADEARR  60
RQEEEDAAIR LVHLIVTCAG AIEAGDYSTA HTNLVEVHGI LGAIPTAKGI GRVADHFAGA  120
LSQRLFPSSS YPAPPPSATP AELHHHFYEA GPYLKFVYST ANLAILDAFE GCSRVHVVDL  180
ALMQGLQWPE VIQALARRPG GPPHLRITGI GPPMTGDRDE LRDVGVRLAA LAHSLNVPFS  240
FRGVCADQLH TLRPWMLQVV PGEALAINSV LQLHRLLVDP DAAPAVPAPI DTLLDCLTGL  300
QPSVFTVVEQ EADHNNPSLL ERFTNALFHY AAMFDSVVDG GGGVGGAVLA EAYLRAEIFD  360
IVCGEGSARA ERHETVARWR ERFARVGLQQ LPFGPRALDL ATDRLFSLTS RTGSGFSVLE  420
CGGSLALGWQ ERPLYTVTAW GPTGRDAAGA VNDMGGLYYP AAAGNIPNGT TSTESYGWGN  480
LAATQAAAFI MP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-46	57	442	5	380	Protein SCARECROW
5b3h_A	1e-46	57	442	4	379	Protein SCARECROW
5b3h_D	1e-46	57	442	4	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03807A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963578.1	0.0	DELLA protein DWARF8
Refseq	XP_025821834.1	0.0	DELLA protein SLR1-like
TrEMBL	A0A1E5UN44	0.0	A0A1E5UN44_9POAL; DELLA protein DWARF8
TrEMBL	A0A3L6SWQ5	0.0	A0A3L6SWQ5_PANMI; DELLA protein DWARF8-like
STRING	Si024429m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-91	RGA-like 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03807A