PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_03789A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HB-other | ||||||||
Protein Properties | Length: 194aa MW: 21986.6 Da PI: 6.8224 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.5e-17 | 94 | 150 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+ t+++keq ++Le+ F++n++p++ + + LA+ l++t ++V+vWF NrR + k+ Oropetium_20150105_03789A 94 KREYTRLSKEQFDQLEASFQENPNPDKWATRALADTLKMTLKRVQVWFVNRRLRLKR 150 7899**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 78 | 151 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.2E-17 | 85 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.342 | 91 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-14 | 93 | 155 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.87E-14 | 94 | 152 | No hit | No description |
Pfam | PF00046 | 9.7E-15 | 94 | 150 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 126 | 149 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAEYMGIPNS PSGLELTIAT PGSGNGVHIS SSSVPDGNKG SNAENVRELT LLDTFDREEV 60 EEDAQHISSS MEIEAAGDED NRPPVVDRSS SFQKREYTRL SKEQFDQLEA SFQENPNPDK 120 WATRALADTL KMTLKRVQVW FVNRRLRLKR ENTQESEKEL KRQVELLTNE TRHLRQKLKK 180 LKKKAYPVQT TVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 150 | RRLRLKRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_03789A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP40601 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 1e-11 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_03789A |