PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03740A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 370aa    MW: 40417.9 Da    PI: 5.7428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03740AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.7e-26196254259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers + p+++++tY  eH h 
  Oropetium_20150105_03740A 196 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKLVERSLDKPDMLVVTYIAEHCHA 254
                                699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-26190256IPR003657WRKY domain
PROSITE profilePS5081128.518190256IPR003657WRKY domain
SuperFamilySSF1182901.14E-23193256IPR003657WRKY domain
SMARTSM007744.5E-31195255IPR003657WRKY domain
PfamPF031067.2E-22197253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
METSNNDWDL QAVVRSCGTA PCTTTSSSSP PLRRSNDEEE EAASARPFIV DNDVVAGAGG  60
ADFLRQGKQQ PPQAALRDLD YLNLDHERPF FSITPASAAQ RRRAHDHEEL LISFPAASTS  120
GQSRKQTAAG RKSGVRAPRP KRRYVRGRDS YYPLTYTDRV ARKGIAVVDA KFVRSKKNQH  180
KKVVCEVPAA DGGVSTDLWA WRKYGQKPIK GSPYPRGYYK CSSLKACMAR KLVERSLDKP  240
DMLVVTYIAE HCHAVPTMLN SLAGTTRNKP PDQPSSPDQS DAASGGGNKQ REDNDSADTC  300
SLMTVDGGGG GETPPDGENV DLWPVDMALL DDEYPLFDDF LGPFDDEVVA DLSFDCDDEQ  360
GGLQRRMSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-17182257680Disease resistance protein RRS1
5w3x_D1e-17182257680Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03740A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809273.11e-107WRKY transcription factor 22-like
TrEMBLA0A3L6SXR11e-109A0A3L6SXR1_PANMI; WRKY transcription factor 22-like
STRINGPavir.J29891.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.19e-37WRKY DNA-binding protein 27