PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03586A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

VOZ

Protein Properties

Length: 560aa MW: 61721.4 Da PI: 5.4607

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03586A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	413.6	3.7e-127	247	464	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecega 83 p+ps++lgpkcalwdc+rp++gse+++dyc+ +ha+laln+ gl+g++pv+rp+g+dlkdg++f al akvqgk+vgip+c+ga Oropetium_20150105_03586A 247 PSPSQYLGPKCALWDCSRPVRGSEECRDYCNPYHADLALNDdGLLGVRPVVRPRGVDLKDGPFFTALIAKVQGKNVGIPVCKGA 330 89************************************9799************************************ PP VOZ 84 atakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfew 167 at+kspwna+elf+l+llege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ew Oropetium_20150105_03586A 331 ATSKSPWNAPELFNLTLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEW 414 ******************************************************************************** PP VOZ 168 hlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 hl+eyein++dalalyrle+k +d+kks k+k++++sl+++q++++rl+a Oropetium_20150105_03586A 415 HLFEYEINDSDALALYRLEFKCSDAKKSMKSKLASSSLNEIQQQMVRLSA 464 **********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MAGDPAAGAG TDLPASAGKG SRSSTRHRQF RDRAKTRVDD LQEMFSGLQS ARKESRSADA 60 AVLEEQHSQG NNTGAPDLPS ETLRLLQLAV AEEEDDATSK LADPGPPMPV PDAHQNHNLY 120 EHQHGQVAWM PNPEQQGEGT QQLLEHGAQG GCGEVAAANA FNDQMYYIDH ELSIDDFLCD 180 GDGYKINIPE SNPDDLSNLQ GIGQMEDQFN FPVELPSHSS YADVNNAVQD TGDVFVHMSD 240 LLTTIDPSPS QYLGPKCALW DCSRPVRGSE ECRDYCNPYH ADLALNDDGL LGVRPVVRPR 300 GVDLKDGPFF TALIAKVQGK NVGIPVCKGA ATSKSPWNAP ELFNLTLLEG ESLREWLFFD 360 TPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMKDFGGLKR SYYMDPQPSS NYEWHLFEYE 420 INDSDALALY RLEFKCSDAK KSMKSKLASS SLNEIQQQMV RLSADSPVEN KRTARSKAKV 480 SPKDRKANGH PAVKTPSQAS APSAYQAVPQ PQMGQMTFAN ENVVYGPHLP HSKNVVYGPH 540 LPHFYSTEGS SFWNPSDRA*

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MAGDPAAGAG TDLPASAGKG SRSSTRHRQF RDRAKTRVDD LQEMFSGLQS ARKESRSADA  60
AVLEEQHSQG NNTGAPDLPS ETLRLLQLAV AEEEDDATSK LADPGPPMPV PDAHQNHNLY  120
EHQHGQVAWM PNPEQQGEGT QQLLEHGAQG GCGEVAAANA FNDQMYYIDH ELSIDDFLCD  180
GDGYKINIPE SNPDDLSNLQ GIGQMEDQFN FPVELPSHSS YADVNNAVQD TGDVFVHMSD  240
LLTTIDPSPS QYLGPKCALW DCSRPVRGSE ECRDYCNPYH ADLALNDDGL LGVRPVVRPR  300
GVDLKDGPFF TALIAKVQGK NVGIPVCKGA ATSKSPWNAP ELFNLTLLEG ESLREWLFFD  360
TPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMKDFGGLKR SYYMDPQPSS NYEWHLFEYE  420
INDSDALALY RLEFKCSDAK KSMKSKLASS SLNEIQQQMV RLSADSPVEN KRTARSKAKV  480
SPKDRKANGH PAVKTPSQAS APSAYQAVPQ PQMGQMTFAN ENVVYGPHLP HSKNVVYGPH  540
LPHFYSTEGS SFWNPSDRA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03586A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961501.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-125	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	K3Z4V0	0.0	K3Z4V0_SETIT; Uncharacterized protein
STRING	Pavir.Ca01693.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-92	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03586A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]