PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03351A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 266aa    MW: 29637.2 Da    PI: 9.8066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03351AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-151432161596
                                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                                 + lp +f++++   + +++ ++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l++ ++f  ++ +
  Oropetium_20150105_03351A 143 TMGLPSSFCKKNL--PSREFRMVLEDEEGGEFDAVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELVEPDRF--KIYI 216
                                588******9995..346789***************..555444..***********************9987777..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.547129220IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-18133218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-15137218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-20138218No hitNo description
SMARTSM010194.2E-16140220IPR003340B3 DNA binding domain
PfamPF023621.4E-13143217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MATAASSAVC GTAYEEQRRK RVLENLKRLE DLGISEMSKS LLQAARLQSK SKGGVRASPK  60
PRKKFDVTEV RRSSRAKATV SYKDDFGEVD TFLRCKRRSG KSAEQGRGYT GRISSYEQQQ  120
RAFKRAEKLQ DSLDPENPSF VKTMGLPSSF CKKNLPSREF RMVLEDEEGG EFDAVYIGNR  180
TGLSGGWRGF AMHHNLEDGD SLVFELVEPD RFKIYIIKAI DDDVVEEGES DGRNSGGDSK  240
DEPEDGSPAS GPPKGAKRRK LRRRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252258PKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03351A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809297.11e-144B3 domain-containing protein Os05g0481400-like isoform X2
SwissprotQ5KQI41e-116Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A3L6T0I31e-143A0A3L6T0I3_PANMI; B3 domain-containing protein
STRINGPavir.J04157.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-39B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]