PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_03337A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 28223.7 Da PI: 8.4818 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54.8 | 1.8e-17 | 133 | 194 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 +D y+WrKYG K++ ++e+pr YY+C ++ +Cp+kk v+r+++ p +t eH++e Oropetium_20150105_03337A 133 NDHYHWRKYGEKKILNAEYPRLYYKCGYSddhKCPAKKYVQRQNSsHPPQYMVTLIHEHTCE 194 7**************************998899********987415667778888888886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.0E-20 | 123 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-19 | 127 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-26 | 132 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.25 | 133 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-19 | 133 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MSTRHSRSGR MQPPRPSQAI QHLRRGTQLV AELRQKFELN PLDLDLRKAA AALMSQIAEF 60 SESSLSILLS TESEHSSSDA GALAVASPAG HSSAASAETR HGASARTGKV RHRRARLGEK 120 LPIREILTDA PENDHYHWRK YGEKKILNAE YPRLYYKCGY SDDHKCPAKK YVQRQNSSHP 180 PQYMVTLIHE HTCETLFQNV PCTSIGSSQV FDFAKASICP PLMAGTTGLE KEEETWACTS 240 TTHSCENELS AYR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_03337A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681297.1 | 2e-73 | probable WRKY transcription factor 63 | ||||
TrEMBL | K3Z8R3 | 4e-72 | K3Z8R3_SETIT; Uncharacterized protein | ||||
STRING | Si022933m | 7e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9993 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40740.1 | 5e-18 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_03337A |