PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03314A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 482aa    MW: 52017.9 Da    PI: 6.1524
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03314AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32164221260
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                dDgynWrKYGqK++kgse+prsYY+Ct++gC++kkkvers  d++v+ei+Y+g Hnh+k
  Oropetium_20150105_03314A 164 DDGYNWRKYGQKQMKGSENPRSYYKCTFPGCSTKKKVERSP-DGQVTEIVYKGAHNHPK 221
                                8****************************************.***************85 PP
2WRKY101.64.6e-32323381159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct agC v+k+ver+ +d ++v++tYeg+Hnh+
  Oropetium_20150105_03314A 323 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAAGCAVRKHVERACHDARAVVTTYEGKHNHD 381
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-28155222IPR003657WRKY domain
SuperFamilySSF1182901.22E-24160222IPR003657WRKY domain
SMARTSM007742.5E-35163221IPR003657WRKY domain
PfamPF031064.5E-25164220IPR003657WRKY domain
PROSITE profilePS5081124.122164222IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-35308383IPR003657WRKY domain
SuperFamilySSF1182901.7E-28315383IPR003657WRKY domain
PROSITE profilePS5081137.78318383IPR003657WRKY domain
SMARTSM007742.9E-36323382IPR003657WRKY domain
PfamPF031062.3E-24324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAPASLPLSL PPASPASRFN AAAGILDSPI LLTPSLFPSP TTGAFPSEPL NWTGTPENLQ  60
ESIKEEQQQC FDFTFQTETL QQSSMAMAPL EGGLVDPYSG EQQPWNYQER TTDFNAPFEF  120
EAPPFSSGGI TTAQSDTLGN NDGYGTVSNG FREQQQHQSR RSSDDGYNWR KYGQKQMKGS  180
ENPRSYYKCT FPGCSTKKKV ERSPDGQVTE IVYKGAHNHP KPQSTTRRGG ASSSASASSY  240
GALSGTPVAT PENSSGSFGD DEINNGVSSR LVGELGADHQ QLLADDEPGS KRCRRDGGEG  300
DGNRTAVREP RVVVQTLSDI DVLDDGYRWR KYGQKVVKGN PNPRSYYKCT AAGCAVRKHV  360
ERACHDARAV VTTYEGKHNH DVPPVRGSYR SASYHHHQQG VFVGVSHGVA PVQAAESGGG  420
FALSGFGGGN TMSAAPYASY TTSHPQQQQH PQCDALYYAS GSKDEPIDDD GMSFFEQPLL  480
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-35164383877Probable WRKY transcription factor 4
2lex_A7e-35164383877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03314A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570972e-88EU957097.1 Zea mays clone 1582655 WRKY53 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961763.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-122WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLK3Z5160.0K3Z516_SETIT; Uncharacterized protein
STRINGSi021634m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.18e-84WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]