PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02913A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 204aa    MW: 21956.8 Da    PI: 8.2644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02913AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.5e-191421851659
                                TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  16 kgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ++++ prsY+rCt+++C+vkk+ver ++d ++v++tYeg+H+h+
  Oropetium_20150105_02913A 142 RKTREPRSYFRCTHSNCRVKKRVERLSTDCRMVITTYEGRHTHS 185
                                56789**************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.627139184IPR003657WRKY domain
SMARTSM007749.0E-12139186IPR003657WRKY domain
SuperFamilySSF1182906.28E-14140185IPR003657WRKY domain
PfamPF031068.3E-14142184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-15142185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQAYMEGGQL GTCHPNGFVL PDSYAFSFPS TPLLQLPISQ PRRLLQMPVD QGEAGSHGAM  60
LPSEQCGLYP LPALPLGCSA AAAAAVASGG KSAAGFMPSV EEVCTSVTKA TYESNTNCNA  120
SSTWWKGGST TMAERGKMKL RRKTREPRSY FRCTHSNCRV KKRVERLSTD CRMVITTYEG  180
RHTHSPCSDD ASSGDHTDCF TSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02913A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586101e-62KU058610.1 UNVERIFIED: Panicum miliaceum WRKY22-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953301.18e-84probable WRKY transcription factor 12
TrEMBLA0A0A9DKW32e-86A0A0A9DKW3_ARUDO; Uncharacterized protein
STRINGPavir.Ab02456.1.p8e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-28WRKY family protein