PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02558A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 371aa    MW: 39929.6 Da    PI: 7.179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02558AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.84.2e-404214425129
                        NAM  25 gkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108
                                + ++   +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ +++lvg+kktLvf
  Oropetium_20150105_02558A  42 DPRFAP-RAVGEADLNKCEPWDLPSRATWGEKEWYFFVVKDRKYPTGLRTNRATESGYWKATGKDREIFR-GKALVGMKKTLVF 123
                                444444.57999************988899****************************************.99*********** PP

                        NAM 109 ykgrapkgektdWvmheyrle 129
                                y+grap+g kt Wvmheyrle
  Oropetium_20150105_02558A 124 YTGRAPRGGKTGWVMHEYRLE 144
                                *******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-499185IPR003441NAC domain
PROSITE profilePS5100547.39618185IPR003441NAC domain
PfamPF023659.9E-1759143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEHDVHHQQQ ATMEVVELPP GFRXXXXXXX XXXXXXARKA ADPRFAPRAV GEADLNKCEP  60
WDLPSRATWG EKEWYFFVVK DRKYPTGLRT NRATESGYWK ATGKDREIFR GKALVGMKKT  120
LVFYTGRAPR GGKTGWVMHE YRLEGKHAAA TNGGGAGSSS SNQLLPSLKA ATSKDEWVLC  180
RVFQKNIEPP TVAGCGKRSA GSSASAFMED VGPSMSMADE VAAACALPPL MDVSGISGGP  240
MSLSASAASI ELPAHVTCFS NALEAHHEFL NNPSFILPFS APADRFAMAS AASPFLASVQ  300
TMQYDGGMAH QEGVGGGWYG KLGERERLSG GASQDTGLTS EVNPAEISSS SARQHVNHHP  360
HEAASLLWDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4481867166NO APICAL MERISTEM PROTEIN
1ut4_B3e-4481867166NO APICAL MERISTEM PROTEIN
1ut7_A3e-4481867166NO APICAL MERISTEM PROTEIN
1ut7_B3e-4481867166NO APICAL MERISTEM PROTEIN
4dul_A3e-4481867166NAC domain-containing protein 19
4dul_B3e-4481867166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02558A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658981e-146BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBankKJ7280211e-146KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796322.11e-158NAC domain-containing protein 92-like
TrEMBLA0A2S3GQ971e-157A0A2S3GQ97_9POAL; Uncharacterized protein
STRINGSi017567m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.15e-71NAC domain containing protein 46