PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02529A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 443aa MW: 47627.9 Da PI: 7.9274 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.8 | 4.8e-07 | 233 | 254 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Oropetium_20150105_02529A 233 FCEICGKGFRRDANLRMHMRAH 254 6*******************99 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00056 | 318 | 342 | 1 | 23 |
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + Oropetium_20150105_02529A 318 YACERCGgkKRFAVLADLRSHLRHC 342 89********************987 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0015 | 352 | 367 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ Oropetium_20150105_02529A 352 CGTTFSRKDKLFGHMA 367 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.98E-6 | 229 | 254 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-6 | 232 | 254 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0017 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.676 | 232 | 254 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 280 | 313 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 17 | 318 | 341 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 210 | 348 | 372 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MASVLQSLRT ETGRGMTVPA AHAIARSPRS DVVRSHGKKA PNLKFQVGYH HSIHPLAMGS 60 TTHQLAGAAV SAQVAFASRA TSAVASMTVP GGAPSEAGGG DGDPRTALLR LAALGDHMAS 120 VRRRIAASLS GESLPLTAAD IHSVSSEISX XXXXXXXXXX SLLASSVPVP APSPSPPSPP 180 PPPAYTPAPA PIQEHLAASA SAQERPQMVA KGDSAYDVVE LDADELLAEH IHFCEICGKG 240 FRRDANLRMH MRAHGDRFKT LDALSRPCLP KQLGGRDLRF SCPSEGCNRN RAHRRFRPLK 300 SAVCARNHFR RSHCPKLYAC ERCGGKKRFA VLADLRSHLR HCGEEAQWRC SCGTTFSRKD 360 KLFGHMALFE GHTPAVTEPN KGVVSESTEA QLEPMEEGGV EGNGDREEDE EGGYESVFFK 420 EWMDELRDGA AGSNWHEPAA AW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02529A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794886.1 | 1e-168 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
TrEMBL | A0A1E5VDK3 | 1e-174 | A0A1E5VDK3_9POAL; Zinc finger protein STOP1-like protein | ||||
STRING | OPUNC02G19290.1 | 1e-166 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12550 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 4e-69 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02529A |