PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02318A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 28680.6 Da PI: 4.6835 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.7e-20 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k Oropetium_20150105_02318A 77 KKRRLTTEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 130 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.3 | 8.7e-43 | 76 | 168 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L++++ Oropetium_20150105_02318A 76 EKKRRLTTEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDFDRLKAAYDALAADHQGLRADN 159 69********************************************************************************** PP HD-ZIP_I/II 85 eeLreelke 93 ++Lr+++++ Oropetium_20150105_02318A 160 DRLRAQVTS 168 ****99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 18.285 | 72 | 132 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.55E-19 | 72 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.2E-19 | 75 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.31E-18 | 77 | 133 | No hit | No description |
Pfam | PF00046 | 2.4E-17 | 77 | 130 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 78 | 138 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.0E-6 | 103 | 112 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 107 | 130 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.0E-6 | 112 | 128 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.3E-16 | 132 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDPGSTGFDS GGARRGGGPQ MLLFGGGGSA NSNGFIRGVP MAVLGRDDDA RVGKRPFFTT 60 HEELFEEEYY DEQAPEKKRR LTTEQVQMLE RSFEEENKLE PERKTELARR LGMAPRQVAV 120 WFQNRRARWK TKQLETDFDR LKAAYDALAA DHQGLRADND RLRAQVTSLT EKLQGKVTSP 180 SATTTVQEVD HSDDHTNISD PEKLLVQQVK EAHGALSSEE EDGGVVSDEG CSFDFPDALF 240 TVGPAEAQLG SLASWFWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 132 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02318A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973433.1 | 1e-129 | homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q6ZA74 | 6e-89 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q9XH36 | 7e-89 | HOX5_ORYSI; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | B4FLB1 | 1e-135 | B4FLB1_MAIZE; HB transcription factor | ||||
STRING | Si014228m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-53 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02318A |
Publications ? help Back to Top | |||
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