PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02256A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 98aa    MW: 10336 Da    PI: 10.722
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02256AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.7e-283584251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rien++ rqvtfskRr g++KKA+EL +LCdaev +++fsstg++ye++s
  Oropetium_20150105_02256A 35 RIENSTSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGRVYEFAS 84
                               9***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.5532686IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-392685IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-282689IPR002100Transcription factor, MADS-box
CDDcd002654.51E-382787No hitNo description
PRINTSPR004041.6E-282848IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002882IPR002100Transcription factor, MADS-box
PfamPF003193.2E-273582IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-284863IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-286384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MGVDGHASGP DMTAGASAAS VGKKKMGRGK IVIQRIENST SRQVTFSKRR SGLFKKAKEL  60
AILCDAEVGL VVFSSTGRVY EFASTRTLGV QKCEQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-192685160MEF2C
5f28_B1e-192685160MEF2C
5f28_C1e-192685160MEF2C
5f28_D1e-192685160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02256A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393156.14e-32MADS2 isoform X1
SwissprotQ6EP497e-32MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLB9FFJ72e-32B9FFJ7_ORYSJ; Os04g0461300 protein
STRINGOS04T0461300-013e-33(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.17e-33AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]