PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_02073A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 24821.7 Da PI: 7.8037 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50 | 5.2e-16 | 13 | 102 | 3 | 88 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 k lt+sd ++ gr+vlpk+ ae++ ++ + ++ l + d++ +W++k++y ++ks++y+l+ + eFvk ++L++gD+++ Oropetium_20150105_02073A 13 KDLTNSDCGNIGRIVLPKRDAEANlpFLVDKDGMILEMDDLELpDVWKFKYRYwpNNKSRMYILE-TTGEFVKKHNLEVGDIFI 95 789***********************777778999*****6656*********888888888888.9***************** PP EEE-SSS CS B3 82 Fkldgrs 88 ++ ++r+ Oropetium_20150105_02073A 96 IYQHKRT 102 *954433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-23 | 6 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-18 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.642 | 11 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-10 | 11 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-13 | 13 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.32E-19 | 15 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
VLNCKDYHTV LRKDLTNSDC GNIGRIVLPK RDAEANLPFL VDKDGMILEM DDLELPDVWK 60 FKYRYWPNNK SRMYILETTG EFVKKHNLEV GDIFIIYQHK RTGRQVARAV KAKQLSSNLN 120 LLQCQCMKEG NSSEECGFAA LFGAAPWCSR SSTVLPLCCV RLSCSRELVK PEKVALPAPC 180 YIFACPEEPL RATGHQQCWL QTERSDEERS LTGPMMSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 6e-34 | 13 | 98 | 15 | 100 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 6e-34 | 13 | 98 | 15 | 100 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_02073A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825471.1 | 4e-68 | putative B3 domain-containing protein Os04g0676650 | ||||
Swissprot | Q7XKC4 | 7e-53 | Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650 | ||||
TrEMBL | A0A3L6Q928 | 1e-67 | A0A3L6Q928_PANMI; Putative B3 domain-containing protein | ||||
STRING | Pavir.Ga00232.1.p | 5e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11817 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 3e-33 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_02073A |