PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_01926A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | SBP | ||||||||
Protein Properties | Length: 385aa MW: 42152.2 Da PI: 7.9188 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.8 | 2.1e-40 | 161 | 239 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Oropetium_20150105_01926A 161 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 239 6******************************98725689*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.2E-34 | 156 | 224 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.291 | 159 | 237 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.49E-37 | 160 | 240 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.5E-31 | 162 | 236 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MMNIPAAANN ACDEFPYVSP SPAAPSSSLF PIMEQEQREQ LGYNLEANSL ALLPPSNAAA 60 AAHQTTIAGH STHDILQFYP ATASSHYLAG GNPYFTGGST YQAYYPQQAA QATPEYYXXX 120 XXXXXXXNLA SFAATQLGLN LGYRTYFPPR GGYTYGHHPP RCQAEGCKAD LSSAKRYHRR 180 HKVCEHHSKA PVVVTAGGLH QRFCQQCSRF HLLDEFDDAK KSCRKRLADH NRRRRKSKPS 240 SDADAADKKR AQANKAAAAK DKAGSSSKNM DIGDGLTTQV LGSALLSKEQ DQDMDLGEVV 300 KEAVDPKGKS SMQQHAHHHH GIHHHSFPFP TSSGSCFPQS QAVSSDNTSN IAQVQEPSLA 360 FHQHHQHSNI LQLGQAMFDM DFDH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 162 | 236 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 249 | RRRRKSKPSSDADAADKKR |
2 | 232 | 237 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_01926A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ZMU89496 | 0.0 | U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960135.1 | 0.0 | protein LIGULELESS 1 | ||||
Swissprot | Q01KM7 | 1e-179 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0A9DKR3 | 0.0 | A0A0A9DKR3_ARUDO; Lg1 | ||||
STRING | Si022315m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-41 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_01926A |