PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01614A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

WRKY

Protein Properties

Length: 309aa MW: 32680.5 Da PI: 10.8551

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01614A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	52.8	7.8e-17	221	253	3	34
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T--- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpv 34 D+y+WrKYGqK++kgs++pr+YY+C++ gCp Oropetium_20150105_01614A 221 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPX 253 9************************98879985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.3E-18	175	217	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.8E-18	207	253	IPR003657	WRKY domain
PROSITE profile	PS50811	18.854	214	252	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-14	217	253	IPR003657	WRKY domain
SMART	SM00774	9.2E-8	219	264	IPR003657	WRKY domain
Pfam	PF03106	6.5E-13	221	252	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAVDLMGCYA PRRANDQLAI QEAATAGLRS LELLVSSLSS QAAAPHKAAL LQQHQQQPFG 60 EIADQAVSKF RKVISILDRT GHARFRRGPV EPPPAPAASA PLPVPHVAPV VAQPAPTSQP 120 QSLTLDFTKP NLTMSGATSV TSTSFFSSVT AGEGSVSKGR SLLSAGKPPL SGHKRKPCAG 180 AHSEATTNGS RCHCSKRRKN RVKRTIRVPA ISSKIADIPP DEYSWRKYGQ KPIKGSPYPR 240 GYYKCSTVRG CPXXXXXXXX XXXXXXXXXX XXXXXXXXXX ATAPSPLAPL PVAPAAAVAS 300 LSAGNGLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01614A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058615	0.0	KU058615.1 UNVERIFIED: Panicum miliaceum WRKY26-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826285.1	1e-131	WRKY transcription factor WRKY51-like
Swissprot	Q9SV15	3e-74	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A3FBG0	1e-132	A3FBG0_WHEAT; WRKY transcription factor
STRING	OMERI10G14590.1	1e-132	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	6e-57	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01614A

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]