PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01584A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 269aa MW: 30104.4 Da PI: 10.1476

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01584A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	5e-33	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+a+++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR Oropetium_20150105_01584A 11 KPRLRWTPDLHQRFVDAITKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRQ 65 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-32	8	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.608	8	68	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.5E-24	11	65	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.73E-16	11	65	IPR009057	Homeodomain-like
Pfam	PF00249	5.7E-9	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-20	112	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MKAVAFSRDP KPRLRWTPDL HQRFVDAITK LGGPDKATPK SVLRLMGMKG LTLYHLKSHL 60 QKYRQGMHGK KSTGLQSVNT DGFTLQGISF STAAPPGVPA EGNNTGESPL VDALRYQVQV 120 QTKLQEQLEV QKKLQMRIEA QGKYLKAILE KAHRNISFHE NACGKTESTR LQLTDFKLAL 180 SGFVDNATQV HEENSGRLVK HISDDNHKDN HLSFQLYNVG RQEAKDVKRT PKTEDSHLLD 240 LNIRGGFDLS LRGMQACELD LKINQQIV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	11	64	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	11	64	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	11	64	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	11	64	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	11	64	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01584A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976682.1	1e-142	myb family transcription factor PHL11
TrEMBL	K3Y9A2	1e-141	K3Y9A2_SETIT; Uncharacterized protein
STRING	Si010794m	1e-142	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-52	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01584A