PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01474A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 291aa    MW: 32922.4 Da    PI: 9.0833
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01474AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-31958150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ 
  Oropetium_20150105_01474A  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58
                               79**********************************************95 PP
2K-box15.19.3e-071051281336
                      K-box  13 kaeslqqelakLkkeienLqreqR 36 
                                +++s++qe+++Lk++ e+Lqr+qR
  Oropetium_20150105_01474A 105 DSKSWYQEISRLKAKFESLQRSQR 128
                                5799******************99 PP
3K-box713.6e-241492133599
                      K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                +Rh+lGedL++Ls+keLqqLe+qLe +l++ R++K+++++eq++el++ke++l e nk+L+++le
  Oropetium_20150105_01474A 149 LRHMLGEDLGPLSIKELQQLEKQLEYALSQARQRKTQIMMEQMDELRRKERQLGELNKQLKNQLE 213
                                59************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.07E-45278No hitNo description
SuperFamilySSF554555.23E-33276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.144106218IPR002487Transcription factor, K-box
PfamPF014867.4E-21149212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSA  60
GVNKTLEKYH NCCYNHGQGS NNGFGGEPQL EVVRMHASKY VSLFDSKSWY QEISRLKAKF  120
ESLQRSQRTD DYSSRYLLHY VISTYFLFLR HMLGEDLGPL SIKELQQLEK QLEYALSQAR  180
QRKTQIMMEQ MDELRRKERQ LGELNKQLKN QLEAEGCSRY KAVETSCAPN ATVGIDGRAH  240
SVPNALPGAA TDCEPTLQIG YHQFAAPEPA AMPRNGTDGG ENNFVLGWVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-20269168Myocyte-specific enhancer factor 2A
3mu6_B3e-20269168Myocyte-specific enhancer factor 2A
3mu6_C3e-20269168Myocyte-specific enhancer factor 2A
3mu6_D3e-20269168Myocyte-specific enhancer factor 2A
5f28_A4e-20169169MEF2C
5f28_B4e-20169169MEF2C
5f28_C4e-20169169MEF2C
5f28_D4e-20169169MEF2C
6byy_A4e-20181181MEF2 CHIMERA
6byy_B4e-20181181MEF2 CHIMERA
6byy_C4e-20181181MEF2 CHIMERA
6byy_D4e-20181181MEF2 CHIMERA
6bz1_A4e-20181181MEF2 CHIMERA
6bz1_B4e-20181181MEF2 CHIMERA
6bz1_C4e-20181181MEF2 CHIMERA
6bz1_D4e-20181181MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01474A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5410679e-71AY541067.1 Hordeum vulgare subsp. vulgare AGAMOUS LIKE6-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824169.11e-141MADS-box transcription factor 17-like
SwissprotQ7XUN21e-112MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A2S3I9M91e-139A0A2S3I9M9_9POAL; Uncharacterized protein
STRINGSi010898m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41873566
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-84AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]